ModCRE DB

Transcription factor

A0A076MKN9 - CDX2

CDX2/AS

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 271 aa

45 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)5
MotifPredictionSourceDNA bindingSupportLogoActions
MA0465.1 NN 70+% JASPAR AAGCCATAAAA 98.2% identity Open · Scan
M09193_2.00 NN 70+% CisBP TTTTATGGCCTT 95.1% identity Open · Scan
M05019_2.00 NN 70+% CisBP GGTCGTAAAAC 75.3% identity Open · Scan
M02211_2.00 NN 70+% CisBP TTAATTAC 73.0% identity Open · Scan
M06224_2.00 NN 70+% CisBP ATCATAAAA 72.5% identity Open · Scan
Nearest Neighbor (70% - 40%)40
MotifPredictionSourceDNA bindingSupportLogoActions
M06227_2.00 NN 70-40% CisBP TTAATTAT 69.2% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 64.1% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 64.1% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 64.1% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 64.1% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 64.1% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 64.1% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 61.5% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 61.5% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 61.5% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 58.9% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 58.9% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 58.9% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 58.9% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 58.9% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 58.9% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 58.9% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 56.4% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 56.4% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 53.8% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 53.8% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 53.8% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 53.8% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 53.8% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 53.8% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 53.8% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 52.6% identity Open · Scan
M10761_2.00 NN 70-40% CisBP CATAAAT 51.5% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 51.2% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 51.2% identity Open · Scan
MA0912.1 NN 70-40% JASPAR TTGAGTTAATTAACCT 51.2% identity Open · Scan
MA0912.2 NN 70-40% JASPAR CTAATTAC 51.2% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 51.1% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 51.1% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 51.1% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 51.1% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 50.0% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 50.0% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 50.0% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 271 aa
186-224

Region 186-224 0 PWM

Residues
39 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
3RKQ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 186-2241 model
Actions
Predicted = Low DIMER_A0A076MKN9:186:224_3rkq_B_1 3rkq 186-224 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
13-174PF04731Caudal like protein activation regionNo overlap with loaded model regions
186-226PF00046Homeodomainoverlaps 186-224