ModCRE DB

Transcription factor

A0A087WVA2 - ZNF658

Zinc finger protein 658

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 597 aa

31 Generated PWM 29 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)20
MotifPredictionSourceDNA bindingSupportLogoActions
M00952_2.00 NN 70-40% CisBP GGATGCTC 65.4% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 64.2% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.0% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 63.0% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 63.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 63.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 61.9% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 61.9% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.4% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 58.3% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 57.8% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 54.6% identity Open · Scan
M00134_2.00 NN 70-40% CisBP GCCACGCCCA 54.2% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.3% identity Open · Scan
MA1155.1 NN 70-40% JASPAR TGCACACACTGAAAA 51.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.4% identity Open · Scan
MA1513.1 NN 70-40% JASPAR GCCCCGCCCCC 50.0% identity Open · Scan
ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:499:596_2jp9_A_1 ModCRE Homology model GTGGGGGGGGGGACCCC Region 499-596 · 1 3D model Open · Scan
TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:515:596_1p47_A_1 ModCRE Homology model GGGGGGGGGGGGGGGG Region 515-596 · 1 3D model Open · Scan
TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:515:596_4r2c_A_1 ModCRE Homology model GGGGCCGGGG Region 515-596 · 1 3D model Open · Scan
TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:515:596_4r2d_A_1 ModCRE Homology model GGGGGCGGGG Region 515-596 · 1 3D model Open · Scan
TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:515:596_4x9j_A_1 ModCRE Homology model GGGGCCGGGG Region 515-596 · 1 3D model Open · Scan
a0a087wva2.af3.0 ModCRE AlphaFold3 model GCCCCCCCCCCCGGCCCAGGGGGGT AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wva2.af3.1 ModCRE AlphaFold3 model GCCCCCCCCCCCGGCCCAGGGGGGT AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wva2.af3.2 ModCRE AlphaFold3 model AATTGGGCCCCCCCCCCCGGGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wva2.af3.3 ModCRE AlphaFold3 model TCCTGGGCCCCCCCAAGTCGCTGAATTTTA AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wva2.af3.4 ModCRE AlphaFold3 model CACCCCGGGGGGGGGGGCCCCG AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wva2.af3.5 ModCRE AlphaFold3 model GCCCCTGGGGGGGGGGAGGCCGAAA AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 597 aa
325-597

Region 325-597 5 PWM

Residues
273 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 1P47, 2I13, 2JP9, 4R2C, 4R2D, 4X9J, 5EH2, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
29 active PDB models 6 summary rows
Region 325-59711 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A087WVA2_A0A087WVA2_HUMAN:544:595_1llm_C_1 1llm 544-595 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:325:597_5wjq_D_1 5wjq 325-597 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:329:597_5v3j_E_1 5v3j 329-597 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:329:597_5v3m_C_1 5v3m 329-597 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:449:596_2i13_A_1 2i13 449-596 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:496:597_5eh2_F_1 5eh2 496-597 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:499:596_2jp9_A_1 2jp9 499-596 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:515:596_1p47_A_1 1p47 515-596 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:515:596_4r2c_A_1 4r2c 515-596 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:515:596_4r2d_A_1 4r2d 515-596 View model · PDB
Predicted = Low TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:515:596_4x9j_A_1 4x9j 515-596 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5eh2 325:597 496 597 P:F · DNA:C,D 55.9% / 63.7% 93 View · PDB TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:496:597_5eh2_F_1
4 2i13 325:597 449 596 P:A · DNA:C,D 50.0% / 64.9% 96 View · PDB TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:449:596_2i13_A_1
1 1llm 325:597 544,544 595,595 P:C,D · DNA:A,B 42.3% / 61.5% 59,61 View · PDB DIMER_tr_A0A087WVA2_A0A087WVA2_HUMAN:544:595_1llm_C_1
2 5v3m 325:597 329 597 P:C · DNA:A,B 39.3% / 57.5% 96 View · PDB TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:329:597_5v3m_C_1
3 5v3j 325:597 329 597 P:E · DNA:A,B 39.3% / 57.5% 96 View · PDB TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:329:597_5v3j_E_1
1 5wjq 325:597 325 597 P:D · DNA:A,B 36.9% / 54.8% 96 View · PDB TFS_tr_A0A087WVA2_A0A087WVA2_HUMAN:325:597_5wjq_D_1
Full sequence / unlocalized models18 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a087wva2.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_dimer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_dimer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_dimer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_dimer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_dimer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_dimer.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_monomer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_monomer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_monomer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_monomer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_monomer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wva2_monomer.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
7-48PF01352KRAB boxNo overlap with loaded model regions
440-462PF00096Zinc finger, C2H2 typeoverlaps 325-597
518-540PF00096Zinc finger, C2H2 typeoverlaps 325-597
546-568PF00096Zinc finger, C2H2 typeoverlaps 325-597
574-596PF00096Zinc finger, C2H2 typeoverlaps 325-597