ModCRE DB

Transcription factor

A0A087WVB7 - SHOX2

SHOX homeobox 2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 146 aa

111 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)18
MotifPredictionSourceDNA bindingSupportLogoActions
M03204_2.00 NN 70+% CisBP TTAATTGG 98.5% identity Open · Scan
MA0720.1 NN 70+% JASPAR CTAATTAA 94.0% identity Open · Scan
M05367_2.00 NN 70+% CisBP TTAATTAG 82.0% identity Open · Scan
MA0630.1 NN 70+% JASPAR TTAATTGG 82.0% identity Open · Scan
M02231_2.00 NN 70+% CisBP TTAATTGG 74.6% identity Open · Scan
M00354_2.00 NN 70+% CisBP CCGATTA 72.5% identity Open · Scan
MA0780.1 NN 70+% JASPAR TAATCGATTA 72.5% identity Open · Scan
M03855_2.00 NN 70+% CisBP TAATTAGATTA 71.6% identity Open · Scan
M06326_2.00 NN 70+% CisBP TTAATT 71.4% identity Open · Scan
MA0681.1 NN 70+% JASPAR TAATTTAATTA 71.4% identity Open · Scan
MA0713.1 NN 70+% JASPAR TAATTTAATTA 71.4% identity Open · Scan
M06291_2.00 NN 70+% CisBP TTAATTA 71.1% identity Open · Scan
M02111_2.00 NN 70+% CisBP GTTAATTAG 70.9% identity Open · Scan
M05419_2.00 NN 70+% CisBP CGATTAGTCACGGTT 70.9% identity Open · Scan
MA0680.1 NN 70+% JASPAR TAATCGATTA 70.9% identity Open · Scan
MA0721.1 NN 70+% JASPAR CTAATTAA 70.9% identity Open · Scan
M03076_2.00 NN 70+% CisBP TTAATTAAATTAA 70.5% identity Open · Scan
MA0874.1 NN 70+% JASPAR GTCCATTAATTAATGGA 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)93
MotifPredictionSourceDNA bindingSupportLogoActions
MA0075.1 NN 70-40% JASPAR AATTA 69.8% identity Open · Scan
MA0075.3 NN 70-40% JASPAR CTAATTAA 69.8% identity Open · Scan
M06322_2.00 NN 70-40% CisBP TTAATTA 69.1% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 68.9% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 67.6% identity Open · Scan
M02082_2.00 NN 70-40% CisBP ATTGTACAAT 67.2% identity Open · Scan
M03876_2.00 NN 70-40% CisBP TAATTAAATTA 67.2% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 66.1% identity Open · Scan
M03851_2.00 NN 70-40% CisBP CTAATTGA 65.5% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 65.5% identity Open · Scan
MA1481.1 NN 70-40% JASPAR CTAATTAC 64.7% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 64.5% identity Open · Scan
MA0654.1 NN 70-40% JASPAR CTAATTAA 64.4% identity Open · Scan
M03250_2.00 NN 70-40% CisBP TTAATCCG 63.9% identity Open · Scan
MA0711.1 NN 70-40% JASPAR TTAATCCG 63.9% identity Open · Scan
M06310_2.00 NN 70-40% CisBP TTAATTA 63.7% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 63.6% identity Open · Scan
M09681_2.00 NN 70-40% CisBP CTAATCCG 63.4% identity Open · Scan
M09569_2.00 NN 70-40% CisBP GTTAATCCCT 62.9% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 62.7% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 62.1% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 62.1% identity Open · Scan
M09208_2.00 NN 70-40% CisBP CCTAATCCTCTTA 61.9% identity Open · Scan
MA0467.1 NN 70-40% JASPAR AAGAGGATTAG 61.9% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 61.9% identity Open · Scan
M03278_2.00 NN 70-40% CisBP TTAATTTAATTAT 61.7% identity Open · Scan
M04917_2.00 NN 70-40% CisBP GTAATTAG 61.7% identity Open · Scan
MA0853.1 NN 70-40% JASPAR CGCATTAATTAATTACC 61.7% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 61.2% identity Open · Scan
M09153_2.00 NN 70-40% CisBP GTTAATCCCCT 61.1% identity Open · Scan
MA0712.1 NN 70-40% JASPAR TTAATCCT 61.1% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 61.0% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 60.3% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 60.3% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 60.3% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 60.0% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 60.0% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 59.6% identity Open · Scan
M02097_2.00 NN 70-40% CisBP AATTAATTAG 59.2% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 59.0% identity Open · Scan
M06552_2.00 NN 70-40% CisBP TTAATTA 59.0% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 59.0% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 58.5% identity Open · Scan
M06370_2.00 NN 70-40% CisBP TTAATTA 58.4% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 57.8% identity Open · Scan
M10741_2.00 NN 70-40% CisBP AACTAATTACCATTATCG 57.6% identity Open · Scan
MA0662.1 NN 70-40% JASPAR TCTAATTAAC 57.6% identity Open · Scan
MA0854.1 NN 70-40% JASPAR CGAATTAATTAATCACC 57.6% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 57.4% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 57.1% identity Open · Scan
M10806_2.00 NN 70-40% CisBP AATTTTCACGCATGAGTTCAC 56.9% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 56.9% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 56.7% identity Open · Scan
M06523_2.00 NN 70-40% CisBP TTAATTG 56.3% identity Open · Scan
M05245_2.00 NN 70-40% CisBP GTAATTAG 56.2% identity Open · Scan
M02195_2.00 NN 70-40% CisBP CCTAATCCGC 55.9% identity Open · Scan
MA0634.1 NN 70-40% JASPAR TCTAATTAAA 55.9% identity Open · Scan
MA0891.1 NN 70-40% JASPAR CCTAATCCGC 55.9% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 55.8% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 55.7% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 55.7% identity Open · Scan
M00674_2.00 NN 70-40% CisBP TTAATCCC 55.5% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 54.9% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 54.9% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 54.9% identity Open · Scan
MA0125.1 NN 70-40% JASPAR TAATTGGT 54.2% identity Open · Scan
M03121_2.00 NN 70-40% CisBP TTAATTGG 54.1% identity Open · Scan
MA0716.1 NN 70-40% JASPAR CTAATTAA 54.1% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 53.5% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 53.5% identity Open · Scan
M04941_2.00 NN 70-40% CisBP CTAATTAC 53.0% identity Open · Scan
M00679_2.00 NN 70-40% CisBP TTAATCCC 52.5% identity Open · Scan
M02221_2.00 NN 70-40% CisBP CTTAATTGGT 52.3% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 51.7% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 51.7% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 51.7% identity Open · Scan
M06281_2.00 NN 70-40% CisBP TTAATTA 51.6% identity Open · Scan
MA0621.1 NN 70-40% JASPAR AATTAATTAGT 51.4% identity Open · Scan
MA0682.1 NN 70-40% JASPAR TTAATCCC 51.4% identity Open · Scan
M06224_2.00 NN 70-40% CisBP ATCATAAAA 51.1% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 51.0% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 50.8% identity Open · Scan
MA0699.1 NN 70-40% JASPAR GCCAATTAGC 50.8% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 50.8% identity Open · Scan
MA0723.1 NN 70-40% JASPAR CTAATTAC 50.8% identity Open · Scan
MA0894.1 NN 70-40% JASPAR GCTAATTGGC 50.8% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 50.6% identity Open · Scan
M00402_2.00 NN 70-40% CisBP TAATTAG 50.4% identity Open · Scan
M02211_2.00 NN 70-40% CisBP TTAATTAC 50.0% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 50.0% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 50.0% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 50.0% identity Open · Scan
MA0719.1 NN 70-40% JASPAR ATAATCCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 146 aa
60-123

Region 60-123 0 PWM

Residues
64 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 60-1231 model
Actions
Predicted = Low DIMER_A0A087WVB7:60:123_1fjl_A_1 1fjl 60-123 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
62-118PF00046Homeodomainoverlaps 60-123