ModCRE DB

Transcription factor

A0A087WVT1 - ZNF48

Zinc finger protein 48 (Zinc finger protein 553)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 495 aa

28 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)17
MotifPredictionSourceDNA bindingSupportLogoActions
M00960_2.00 NN 70-40% CisBP TGCATCCC 56.9% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 55.8% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 55.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 55.8% identity Open · Scan
M01432_2.00 NN 70-40% CisBP GACGCCAC 55.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 54.6% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 54.6% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 54.6% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 54.6% identity Open · Scan
M01868_2.00 NN 70-40% CisBP TCTTGGCG 52.9% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 52.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 51.7% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 51.1% identity Open · Scan
M01439_2.00 NN 70-40% CisBP TTACGCCACA 51.0% identity Open · Scan
M01440_2.00 NN 70-40% CisBP TACGCCAC 50.9% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 50.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.4% identity Open · Scan
ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:149:258_5ei9_E_1 ModCRE Homology model CCCCGGGGGGGGGAACA Region 149-258 · 1 3D model Open · Scan
TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:2:258_5v3j_E_1 ModCRE Homology model TCCGGGGGGGGCCCCCGGGGGGATCG Region 2-258 · 1 3D model Open · Scan
TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:2:258_5v3m_C_1 ModCRE Homology model CGGGCGGGGGGGGCCAGACGTATTGG Region 2-258 · 1 3D model Open · Scan
TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:2:258_5wjq_D_1 ModCRE Homology model CCCGGGGGGCCCCGGGGGGGCCGGCAAG Region 2-258 · 1 3D model Open · Scan
TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:78:230_2i13_A_1 ModCRE Homology model TCGCGGATCCTGTAGTTAAGT Region 78-230 · 1 3D model Open · Scan
a0a087wvt1.af3.0 ModCRE AlphaFold3 model CCCGCCCCCCGCCCCCCCCCCCCCCCGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wvt1.af3.1 ModCRE AlphaFold3 model GGGCCACCCCAGGCCCCCCCGGGCCCCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wvt1.af3.2 ModCRE AlphaFold3 model ACCGCCCCCCGCCCCCCCCCCCCCCCGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wvt1.af3.3 ModCRE AlphaFold3 model GGGGCCCCCCACACCCCCCCCCGCGTTT AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wvt1.af3.4 ModCRE AlphaFold3 model TCGGGCGCCCCCCGGCCGCCCCCCGGGTTA AlphaFold3 model · ModCRE PWM Open · Scan
a0a087wvt1.af3.5 ModCRE AlphaFold3 model CGGCCAACCCCGGGGGCCCCCGCGGGGAA AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 495 aa
2-258

Region 2-258 5 PWM

Residues
257 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 2-2586 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A087WVT1_A0A087WVT1_HUMAN:178:226_1llm_D_1 1llm 178-226 View model · PDB
Predicted = Low TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:149:258_5ei9_E_1 5ei9 149-258 View model · PDB
Predicted = Low TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:2:258_5v3j_E_1 5v3j 2-258 View model · PDB
Predicted = Low TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:2:258_5v3m_C_1 5v3m 2-258 View model · PDB
Predicted = Low TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:2:258_5wjq_D_1 5wjq 2-258 View model · PDB
Predicted = Low TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:78:230_2i13_A_1 2i13 78-230 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 2:261 149 258 P:E · DNA:A,B 53.6% / 68.2% 99 View · PDB TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:149:258_5ei9_E_1
1 1llm 2:261 178,178 226,226 P:C,D · DNA:A,B 49.0% / 63.3% 56,57 View · PDB DIMER_tr_A0A087WVT1_A0A087WVT1_HUMAN:178:226_1llm_D_1
4 2i13 2:261 78 230 P:A · DNA:C,D 48.7% / 57.8% 99 View · PDB TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:78:230_2i13_A_1
3 5wjq 2:261 2 258 P:D · DNA:A,B 39.3% / 53.8% 91 View · PDB TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:2:258_5wjq_D_1
1 5v3m 2:261 2 258 P:C · DNA:A,B 39.3% / 53.4% 92 View · PDB TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:2:258_5v3m_C_1
2 5v3j 2:261 2 258 P:E · DNA:A,B 39.3% / 53.4% 92 View · PDB TFS_tr_A0A087WVT1_A0A087WVT1_HUMAN:2:258_5v3j_E_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a087wvt1.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wvt1.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wvt1.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wvt1.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wvt1.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a087wvt1.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
17-39PF00096Zinc finger, C2H2 typeoverlaps 2-258
71-91PF00096Zinc finger, C2H2 typeoverlaps 2-258
97-119PF00096Zinc finger, C2H2 typeoverlaps 2-258
152-174PF00096Zinc finger, C2H2 typeoverlaps 2-258
182-202PF00096Zinc finger, C2H2 typeoverlaps 2-258
208-230PF00096Zinc finger, C2H2 typeoverlaps 2-258
236-258PF00096Zinc finger, C2H2 typeoverlaps 2-258
328-350PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
356-378PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
420-442PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
448-470PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions