ModCRE DB

Transcription factor

A0A090N8E5 - LOC135935

UniProtKB entry deleted

20 Generated PWM 38 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)4
MotifPredictionSourceDNA bindingSupportLogoActions
MA0125.1 NN 70-40% JASPAR TAATTGGT 60.7% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 58.6% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 52.9% identity Open · Scan
M02221_2.00 NN 70-40% CisBP CTTAATTGGT 50.9% identity Open · Scan
ModCRE16
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:347:363_5hod_A_1 ModCRE Homology model AAAATTTTTAAAAATTTT Region 347-363 · 1 3D model Open · Scan
DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_1fjl_A_1 ModCRE Homology model CTTAGTTAATTAA Region 350-361 · 1 3D model Open · Scan
DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_1hdd_D_1 ModCRE Homology model GGCAAAAATTTAAAA Region 350-361 · 1 3D model Open · Scan
DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_3hdd_A_1 ModCRE Homology model GGGAAAAATTTTAAAT Region 350-361 · 1 3D model Open · Scan
DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_4qtr_B_1 ModCRE Homology model GTAAATTTAGTTTA Region 350-361 · 1 3D model Open · Scan
TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_3a01_B_1 ModCRE Homology model GGTAAAAATTATAAAG Region 350-361 · 1 3D model Open · Scan
TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_9ant_A_1 ModCRE Homology model TTTAAAAATTTTGA Region 350-361 · 1 3D model Open · Scan
TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:363_3lnq_A_1 ModCRE Homology model GCAAAAAATTTAAA Region 350-363 · 1 3D model Open · Scan
TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:364_2lkx_A_1 ModCRE Homology model GAAAAAATTTTTA Region 350-364 · 1 3D model Open · Scan
TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:366_2me6_A_1 ModCRE Homology model TATAAAATTTTTGA Region 350-366 · 1 3D model Open · Scan
a0a090n8e5.af3.0 ModCRE AlphaFold3 model ACCCAAATTGGGCCACA AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8e5.af3.1 ModCRE AlphaFold3 model AACCAAATTTTTCAAATTGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8e5.af3.2 ModCRE AlphaFold3 model AACCTAATTGGGCCAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8e5.af3.3 ModCRE AlphaFold3 model ACCCTAATTTTGCCCCAGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8e5.af3.4 ModCRE AlphaFold3 model ACCCAAATTGGGCCACA AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8e5.af3.5 ModCRE AlphaFold3 model ACCCAAATTGGGCCCCA AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

Region 272-318 0 PWM

Residues
47 aa
Domains
No overlapping PFAM annotation recorded
3D models
10 active PDBs · 10 summary rows
Templates
1FJL, 2HDD, 2LKX, 3A01, 3CMY, 3HDD, 3LNQ, 4J19
Sources
Predicted = Low
Scan this region Show models

Region 347-366 10 PWM

Residues
20 aa
Domains
No overlapping PFAM annotation recorded
3D models
10 active PDBs
Templates
1FJL, 1HDD, 2LKX, 2ME6, 3A01, 3HDD, 3LNQ, 4QTR, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
38 active PDB models 10 summary rows
Region 272-31810 models · 10 summary rows
Actions
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:315_4j19_B_1 4j19 272-315 View model · PDB
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:318_1fjl_A_1 1fjl 272-318 View model · PDB
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:273:318_3a01_B_1 3a01 273-318 View model · PDB
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:276:318_2hdd_A_1 2hdd 276-318 View model · PDB
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:276:318_3hdd_A_1 3hdd 276-318 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:318_1fjl_A_1 1fjl 272-318 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:318_2lkx_A_1 2lkx 272-318 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:318_3cmy_A_1 3cmy 272-318 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:273:318_3a01_B_1 3a01 273-318 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:276:318_3lnq_A_1 3lnq 276-318 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 3lnq 272:318 276 318 P:A · DNA:B,C 53.5% / 62.8% 74 View · PDB TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:276:318_3lnq_A_1
1 3a01 272:318 272,273 316,318 P:A,B · DNA:C,D 50.0% / 63.0% 57,80 View · PDB DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:273:318_3a01_B_1
2 3a01 272:318 272,273 316,318 P:A,B · DNA:C,D 50.0% / 63.0% 57,80 View · PDB TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:273:318_3a01_B_1
4 3cmy 272:318 272 318 P:A · DNA:B,C 42.6% / 68.1% 78 View · PDB TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:318_3cmy_A_1
3 2lkx 272:318 272 318 P:A · DNA:B,C 42.6% / 59.6% 69 View · PDB TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:318_2lkx_A_1
2 1fjl 272:318 272,272 318,318 P:A,B · DNA:D,E 40.4% / 63.8% 72,82 View · PDB DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:318_1fjl_A_1
5 1fjl 272:318 272,272 318,318 P:A,B · DNA:D,E 40.4% / 63.8% 72,82 View · PDB TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:318_1fjl_A_1
3 4j19 272:318 275,272 315,315 P:A,B · DNA:C,D 36.4% / 52.3% 53,57 View · PDB DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:272:315_4j19_B_1
4 3hdd 272:318 276,274 318,318 P:A,B · DNA:C,D 27.9% / 60.5% 78,80 View · PDB DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:276:318_3hdd_A_1
5 2hdd 272:318 276,273 318,318 P:A,B · DNA:C,D 27.9% / 60.5% 78,82 View · PDB DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:276:318_2hdd_A_1
Region 347-36610 models
Actions
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:347:363_5hod_A_1 5hod 347-363 View model · PDB
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_1fjl_A_1 1fjl 350-361 View model · PDB
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_1hdd_D_1 1hdd 350-361 View model · PDB
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_3hdd_A_1 3hdd 350-361 View model · PDB
Predicted = Low DIMER_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_4qtr_B_1 4qtr 350-361 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_3a01_B_1 3a01 350-361 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:361_9ant_A_1 9ant 350-361 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:363_3lnq_A_1 3lnq 350-363 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:364_2lkx_A_1 2lkx 350-364 View model · PDB
Predicted = Low TFS_tr_A0A090N8E5_A0A090N8E5_HUMAN:350:366_2me6_A_1 2me6 350-366 View model · PDB
Full sequence / unlocalized models18 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a090n8e5.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_dimer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_dimer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_dimer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_dimer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_dimer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_dimer.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_monomer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_monomer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_monomer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_monomer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_monomer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8e5_monomer.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags1
Homeobox