ModCRE DB

Transcription factor

A0A090N8F2 - ZNF398

UniProtKB entry deleted

31 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)20
MotifPredictionSourceDNA bindingSupportLogoActions
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 60.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 54.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 54.7% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 53.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 53.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 53.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 53.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 53.5% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 53.5% identity Open · Scan
M01538_2.00 NN 70-40% CisBP GCCCCTGA 53.4% identity Open · Scan
M08358_2.00 NN 70-40% CisBP CCCTCCCCCTCC 53.0% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 52.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 52.3% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 52.0% identity Open · Scan
M01447_2.00 NN 70-40% CisBP TACCCCTGA 51.7% identity Open · Scan
M01441_2.00 NN 70-40% CisBP CCCCTGAATT 50.0% identity Open · Scan
M02903_2.00 NN 70-40% CisBP ATGCCACGCCCCTTTTTG 50.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 50.0% identity Open · Scan
M08525_2.00 NN 70-40% CisBP CCCCGCA 50.0% identity Open · Scan
M08540_2.00 NN 70-40% CisBP CCCCT 50.0% identity Open · Scan
ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:169:416_5wjq_D_1 ModCRE Homology model CCCCCTGCACCCCCCCGCGCGGGCCCCC Region 169-416 · 1 3D model Open · Scan
TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:174:421_5v3j_E_1 ModCRE Homology model CGGAACCCACCGGGGGGGTCCCT Region 174-421 · 1 3D model Open · Scan
TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:174:421_5v3m_C_1 ModCRE Homology model CTCCAGGTCCAAGCCCGCCCCCCC Region 174-421 · 1 3D model Open · Scan
TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:265:417_2i13_A_1 ModCRE Homology model TATCAGCTAGCGGGCTATAAC Region 265-417 · 1 3D model Open · Scan
TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:281:391_5ei9_E_1 ModCRE Homology model CGGGCCCCGGCCCGGGGC Region 281-391 · 1 3D model Open · Scan
a0a090n8f2.af3.0 ModCRE AlphaFold3 model GGACCCGTTCCCCCCCCCCGGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8f2.af3.1 ModCRE AlphaFold3 model CCCCACGAGGGGGCCCCGCCGGAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8f2.af3.2 ModCRE AlphaFold3 model CCACCACTCCCCCCCCCCCCCAAG AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8f2.af3.3 ModCRE AlphaFold3 model CCCCCCGGTCCCCACCCCCCCAAG AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8f2.af3.4 ModCRE AlphaFold3 model GGACCCGTTCCCCCCCCCCGGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a090n8f2.af3.5 ModCRE AlphaFold3 model CCACGCGAGGCCGGGCGCCCCAAG AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

Region 169-421 5 PWM

Residues
253 aa
Domains
No overlapping PFAM annotation recorded
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 169-4216 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A090N8F2_A0A090N8F2_HUMAN:338:389_1llm_C_1 1llm 338-389 View model · PDB
Predicted = Low TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:169:416_5wjq_D_1 5wjq 169-416 View model · PDB
Predicted = Low TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:174:421_5v3j_E_1 5v3j 174-421 View model · PDB
Predicted = Low TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:174:421_5v3m_C_1 5v3m 174-421 View model · PDB
Predicted = Low TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:265:417_2i13_A_1 2i13 265-417 View model · PDB
Predicted = Low TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:281:391_5ei9_E_1 5ei9 281-391 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
5 5ei9 169:427 281 391 P:E · DNA:A,B 51.4% / 67.6% 100 View · PDB TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:281:391_5ei9_E_1
4 2i13 169:427 265 417 P:A · DNA:C,D 48.4% / 64.1% 99 View · PDB TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:265:417_2i13_A_1
1 1llm 169:427 338,338 389,389 P:C,D · DNA:A,B 42.3% / 61.5% 59,61 View · PDB DIMER_tr_A0A090N8F2_A0A090N8F2_HUMAN:338:389_1llm_C_1
2 5v3m 169:427 174 421 P:C · DNA:A,B 40.2% / 52.2% 88 View · PDB TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:174:421_5v3m_C_1
3 5v3j 169:427 174 421 P:E · DNA:A,B 40.2% / 52.2% 88 View · PDB TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:174:421_5v3j_E_1
1 5wjq 169:427 169 416 P:D · DNA:A,B 38.2% / 53.4% 87 View · PDB TFS_tr_A0A090N8F2_A0A090N8F2_HUMAN:169:416_5wjq_D_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a090n8f2.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8f2.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8f2.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8f2.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8f2.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a090n8f2.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags21
COX5BCpXCCxxC_CxxC_SSSSDUF164DZRDesulfoferrod_NElf1FYDLN_acidPyrI_CZn_Tnp_IS1595zf-BEDzf-C2H2zf-C2H2_4zf-C2H2_6zf-C2H2_jazzf-C2HC_2zf-H2C2_2zf-HYPFzf-MYNDzf-RING_3zf-met