ModCRE DB

Transcription factor

A0A0A0MS90 - MBD1

Methyl-CpG-binding domain protein 1 (Methyl-CpG-binding protein MBD1)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 566 aa

11 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_3c2i_A_1 ModCRE Homology model CCAACCGTGGCG Region 7-61 · 1 3D model Open · Scan
TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6c1y_A_1 ModCRE Homology model CGCCAAGGTTG Region 7-61 · 1 3D model Open · Scan
TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6ogj_A_1 ModCRE Homology model TATATATGGTG Region 7-61 · 1 3D model Open · Scan
TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6ogj_B_1 ModCRE Homology model GGGGGCA Region 7-61 · 1 3D model Open · Scan
TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6ogk_A_1 ModCRE Homology model CCCGTATGG Region 7-61 · 1 3D model Open · Scan
a0a0a0ms90.af3.0 ModCRE AlphaFold3 model GCCTATGGGGCCCTTGAGGA AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0ms90.af3.1 ModCRE AlphaFold3 model GCCCAATGAAAACCCAGGGGCCCCAAAATT AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0ms90.af3.2 ModCRE AlphaFold3 model GCCTATGGGGCCCTTGAGGA AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0ms90.af3.3 ModCRE AlphaFold3 model CCCTTTTGGGCCCTTGAGGTA AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0ms90.af3.4 ModCRE AlphaFold3 model GGCCCCCCGAACCCCAGGGTCCCCAAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0ms90.af3.5 ModCRE AlphaFold3 model GCCCCACCCAACCTCAGGGCCCTAAAAAA AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 566 aa
7-61

Region 7-61 5 PWM

Residues
55 aa
Domains
PF01429 · Methyl-CpG binding domain
3D models
5 active PDBs · 5 summary rows
Templates
3C2I, 6C1Y, 6OGJ, 6OGK
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 5 summary rows
Region 7-615 models · 5 summary rows
Actions
Predicted = Low TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_3c2i_A_1 3c2i 7-61 View model · PDB
Predicted = Low TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6c1y_A_1 6c1y 7-61 View model · PDB
Predicted = Low TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6ogj_A_1 6ogj 7-61 View model · PDB
Predicted = Low TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6ogj_B_1 6ogj 7-61 View model · PDB
Predicted = Low TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6ogk_A_1 6ogk 7-61 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6ogj 7:61 7 61 P:A · DNA:C,D 43.6% / 52.7% 72 View · PDB TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6ogj_A_1
2 6ogj 7:61 7 61 P:B · DNA:C,D 43.6% / 52.7% 67 View · PDB TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6ogj_B_1
3 6ogk 7:61 7 61 P:A · DNA:C,D 43.6% / 52.7% 72 View · PDB TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6ogk_A_1
4 6c1y 7:61 7 61 P:A · DNA:C,D 43.6% / 52.7% 77 View · PDB TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_6c1y_A_1
5 3c2i 7:61 7 61 P:A · DNA:B,C 43.6% / 52.7% 76 View · PDB TFS_tr_A0A0A0MS90_A0A0A0MS90_HUMAN:7:61_3c2i_A_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a0a0ms90.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0ms90.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0ms90.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0ms90.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0ms90.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0ms90.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
2-70PF01429Methyl-CpG binding domainoverlaps 7-61
169-215PF02008CXXC zinc finger domainNo overlap with loaded model regions
219-262PF02008CXXC zinc finger domainNo overlap with loaded model regions