ModCRE DB

Transcription factor

A0A0A0MSW5 - ZNF778

Zinc finger protein 778

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 757 aa

84 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M08335_2.00 NN 70+% CisBP AGTCGTTGTCTG 96.3% identity Open · Scan
M00939_2.00 NN 70+% CisBP CCACCTCA 70.5% identity Open · Scan
Nearest Neighbor (70% - 40%)82
MotifPredictionSourceDNA bindingSupportLogoActions
M00960_2.00 NN 70-40% CisBP TGCATCCC 65.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 64.7% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 63.5% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 63.5% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 63.5% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 62.8% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 62.3% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 62.3% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 62.3% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 62.3% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 61.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 59.5% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 59.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 58.1% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 58.0% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 57.4% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 57.1% identity Open · Scan
M08309_2.00 NN 70-40% CisBP AAAAACCCCCCTGCAGAGCCCAGCCCT 57.1% identity Open · Scan
M07685_2.00 NN 70-40% CisBP CTTTCCAGCCAC 56.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 56.8% identity Open · Scan
M07775_2.00 NN 70-40% CisBP GCCGAAACCCGGG 56.8% identity Open · Scan
M07586_2.00 NN 70-40% CisBP GGGACCCGGGTGGGGGCGTCCCCC 55.8% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 55.7% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 55.6% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 55.3% identity Open · Scan
M08274_2.00 NN 70-40% CisBP TTACTTGCAGCCCAACGCATTCCTAAC 55.3% identity Open · Scan
M07565_2.00 NN 70-40% CisBP CCTCTGGGGGCTCGTCCA 55.1% identity Open · Scan
M07715_2.00 NN 70-40% CisBP CCGCCGCCGCCGTGG 55.1% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 54.7% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 54.7% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.4% identity Open · Scan
MA1589.1 NN 70-40% JASPAR TAGGAGTGGAATTGCTGGGTC 54.4% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 54.3% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 54.2% identity Open · Scan
M07687_2.00 NN 70-40% CisBP ACAAATAAGGTTCTTGTGCCCCCTGCT 54.0% identity Open · Scan
M07754_2.00 NN 70-40% CisBP CGCCCCCTCCCT 54.0% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 53.6% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 53.5% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 53.2% identity Open · Scan
M08367_2.00 NN 70-40% CisBP GGGGTGATGACCACTCTGGCTTCTTAC 53.2% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 53.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 53.0% identity Open · Scan
MA0741.1 NN 70-40% JASPAR GCCACGCCCCC 53.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 53.0% identity Open · Scan
MA0750.1 NN 70-40% JASPAR GGCGACCACCGA 52.9% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 52.8% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 52.8% identity Open · Scan
M08371_2.00 NN 70-40% CisBP CCAGACTTGTCCTCT 52.7% identity Open · Scan
M00224_2.00 NN 70-40% CisBP CCCGCCCC 52.6% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 52.6% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 52.5% identity Open · Scan
M06108_2.00 NN 70-40% CisBP ACAACAACAAC 52.5% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 52.5% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 52.4% identity Open · Scan
M07582_2.00 NN 70-40% CisBP TCCCTG 52.0% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 51.9% identity Open · Scan
M07562_2.00 NN 70-40% CisBP GAAAAAAAC 51.9% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 51.8% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 51.7% identity Open · Scan
MA1599.1 NN 70-40% JASPAR CGGGCCAAGCCCCTAT 51.6% identity Open · Scan
M04463_2.00 NN 70-40% CisBP CACCACGCCCA 51.3% identity Open · Scan
M06169_2.00 NN 70-40% CisBP GCCACGCCCAAC 51.3% identity Open · Scan
M09008_2.00 NN 70-40% CisBP CCCGGCCCCACCCT 51.3% identity Open · Scan
MA0039.1 NN 70-40% JASPAR TAAAGGAAGG 51.3% identity Open · Scan
MA0039.3 NN 70-40% JASPAR CCACACCCTGC 51.3% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.1% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 51.0% identity Open · Scan
M01442_2.00 NN 70-40% CisBP ACCCCACATT 50.8% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 50.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 50.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 50.6% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.2% identity Open · Scan
M00765_2.00 NN 70-40% CisBP CCCGCCCCC 50.0% identity Open · Scan
M03682_2.00 NN 70-40% CisBP ACGCCACGCCCAGT 50.0% identity Open · Scan
M04430_2.00 NN 70-40% CisBP GACCACGCCCA 50.0% identity Open · Scan
M07701_2.00 NN 70-40% CisBP CCTGGGCTAGGCCCTGGC 50.0% identity Open · Scan
MA0079.1 NN 70-40% JASPAR GGGGCGGGGT 50.0% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 50.0% identity Open · Scan
MA0742.1 NN 70-40% JASPAR GACCACGCCCTTATT 50.0% identity Open · Scan
MA0747.1 NN 70-40% JASPAR GCCACGCCCACT 50.0% identity Open · Scan
MA1517.1 NN 70-40% JASPAR GGCCACGCCCA 50.0% identity Open · Scan
MA1564.1 NN 70-40% JASPAR GCCACGCCCCCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 757 aa
420-696

Region 420-696 0 PWM

Residues
277 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
1 active PDB
Templates
5V3J
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 420-6961 model
Actions
Predicted = Low TFS_A0A0A0MSW5:420:696_5v3j_E_1 5v3j 420-696 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
42-82PF01352KRAB boxNo overlap with loaded model regions
338-358PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
393-415PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
421-443PF00096Zinc finger, C2H2 typeoverlaps 420-696
449-471PF00096Zinc finger, C2H2 typeoverlaps 420-696
477-499PF00096Zinc finger, C2H2 typeoverlaps 420-696
505-527PF00096Zinc finger, C2H2 typeoverlaps 420-696
533-555PF00096Zinc finger, C2H2 typeoverlaps 420-696
561-583PF00096Zinc finger, C2H2 typeoverlaps 420-696
589-611PF00096Zinc finger, C2H2 typeoverlaps 420-696
617-639PF00096Zinc finger, C2H2 typeoverlaps 420-696
645-667PF00096Zinc finger, C2H2 typeoverlaps 420-696
673-695PF00096Zinc finger, C2H2 typeoverlaps 420-696
701-722PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
729-751PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions