ModCRE DB

Transcription factor

A0A0A0MTT2 - ZNF559

Zinc finger protein 559

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 602 aa

59 Generated PWM 24 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)47
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 63.5% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 61.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 60.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 60.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 60.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 59.7% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 58.8% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 58.8% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 58.2% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 57.9% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 57.8% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 57.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 56.6% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 55.6% identity Open · Scan
M07702_2.00 NN 70-40% CisBP CTTCTTCCTTGG 55.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 55.0% identity Open · Scan
M06179_2.00 NN 70-40% CisBP TAAGCCTATAGA 53.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 53.4% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 53.0% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.7% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 52.6% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 52.6% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 52.6% identity Open · Scan
M08903_2.00 NN 70-40% CisBP ATTCCATTCTATTCCATTCT 52.5% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.2% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 52.1% identity Open · Scan
MA0741.1 NN 70-40% JASPAR GCCACGCCCCC 51.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 51.7% identity Open · Scan
M05859_2.00 NN 70-40% CisBP GGCCACGCCCACT 51.6% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 51.3% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 51.3% identity Open · Scan
M08908_2.00 NN 70-40% CisBP GCTGCTGCTTCTGCTG 51.2% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 51.1% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.6% identity Open · Scan
MA0685.1 NN 70-40% JASPAR TAAGCCACGCCCCCTTT 50.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 50.4% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.3% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.3% identity Open · Scan
M04590_2.00 NN 70-40% CisBP TGCGCTAACCATTGC 50.0% identity Open · Scan
M06169_2.00 NN 70-40% CisBP GCCACGCCCAAC 50.0% identity Open · Scan
M09008_2.00 NN 70-40% CisBP CCCGGCCCCACCCT 50.0% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 50.0% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 50.0% identity Open · Scan
MA1515.1 NN 70-40% JASPAR CACCACGCCCA 50.0% identity Open · Scan
ModCRE12
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:415:463_1llm_D_1 ModCRE Homology model TCCGGGCCCGTA Region 415-463 · 1 3D model Open · Scan
TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:272:552_5wjq_D_1 ModCRE Homology model GGGGGGGGGGGGGGGGGGGGGCGGTTGG Region 272-552 · 1 3D model Open · Scan
TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:295:575_7w1m_H_1 ModCRE Homology model ATTCTGGGCCCGCCCCCCCCGGGGACGGGTGGCCCCCAAG Region 295-575 · 1 3D model Open · Scan
TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:332:599_5v3j_E_1 ModCRE Homology model AGTACCAAACCCCCGGGCACAGGAC Region 332-599 · 1 3D model Open · Scan
TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:332:599_5v3m_C_1 ModCRE Homology model GCGGGGGCGGGGGCGGGCGGGGTCCC Region 332-599 · 1 3D model Open · Scan
TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:398:551_2i13_A_1 ModCRE Homology model TTCTAGCTTTAGTGTGTCTTT Region 398-551 · 1 3D model Open · Scan
a0a0a0mtt2.af3.0 ModCRE AlphaFold3 model GCAGCGCACCCCCCCAGTCCCCCCCCCCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0mtt2.af3.1 ModCRE AlphaFold3 model TCTTAAGAGTACTACAGAAAGGAAGAAAAG AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0mtt2.af3.2 ModCRE AlphaFold3 model GGGGGGGGTGGGGGAGGGGGGGGGTCCTTA AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0mtt2.af3.3 ModCRE AlphaFold3 model GCAGCGCACCCCCCCAGTCCCCCCCCCCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0mtt2.af3.4 ModCRE AlphaFold3 model TTTAAAGTATAGTTCAGAGAGGAAGTAATG AlphaFold3 model · ModCRE PWM Open · Scan
a0a0a0mtt2.af3.5 ModCRE AlphaFold3 model ACTTAGTTATACTTAAGAACCTAGGTTAAG AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 602 aa
272-599

Region 272-599 6 PWM

Residues
328 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
24 active PDB models 6 summary rows
Region 272-5996 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:415:463_1llm_D_1 1llm 415-463 View model · PDB
Predicted = Low TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:272:552_5wjq_D_1 5wjq 272-552 View model · PDB
Predicted = Low TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:295:575_7w1m_H_1 7w1m 295-575 View model · PDB
Predicted = Low TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:332:599_5v3j_E_1 5v3j 332-599 View model · PDB
Predicted = Low TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:332:599_5v3m_C_1 5v3m 332-599 View model · PDB
Predicted = Low TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:398:551_2i13_A_1 2i13 398-551 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 272:599 398 551 P:A · DNA:C,D 51.3% / 70.8% 100 View · PDB TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:398:551_2i13_A_1
1 1llm 272:599 415,415 463,463 P:C,D · DNA:A,B 51.0% / 67.3% 56,57 View · PDB DIMER_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:415:463_1llm_D_1
2 5v3m 272:599 332 599 P:C · DNA:A,B 48.5% / 68.5% 96 View · PDB TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:332:599_5v3m_C_1
3 5v3j 272:599 332 599 P:E · DNA:A,B 48.5% / 68.5% 96 View · PDB TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:332:599_5v3j_E_1
1 5wjq 272:599 272 552 P:D · DNA:A,B 47.0% / 64.4% 100 View · PDB TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:272:552_5wjq_D_1
5 7w1m 272:599 295 575 P:H · DNA:F,G 34.5% / 50.0% 87 View · PDB TFS_tr_A0A0A0MTT2_A0A0A0MTT2_HUMAN:295:575_7w1m_H_1
Full sequence / unlocalized models18 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a0a0mtt2.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_dimer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_dimer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_dimer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_dimer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_dimer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_dimer.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_monomer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_monomer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_monomer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_monomer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_monomer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0a0mtt2_monomer.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
77-118PF01352KRAB boxNo overlap with loaded model regions
305-327PF00096Zinc finger, C2H2 typeoverlaps 272-599
361-383PF00096Zinc finger, C2H2 typeoverlaps 272-599
389-411PF00096Zinc finger, C2H2 typeoverlaps 272-599
417-439PF00096Zinc finger, C2H2 typeoverlaps 272-599
445-467PF00096Zinc finger, C2H2 typeoverlaps 272-599
473-495PF00096Zinc finger, C2H2 typeoverlaps 272-599
501-523PF00096Zinc finger, C2H2 typeoverlaps 272-599
529-551PF00096Zinc finger, C2H2 typeoverlaps 272-599
557-579PF00096Zinc finger, C2H2 typeoverlaps 272-599