Transcription factor

A0A0C4DGM2 - ZSCAN29

Zinc finger and SCAN domain containing 29

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 462 aa

126 Generated PWM 24 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)114

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M00764_2.00	NN 70-40%	CisBP	GTCTACAC	67.1% identity		Open · Scan
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	67.0% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	65.8% identity		Open · Scan
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	64.7% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	64.7% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	64.7% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	64.7% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	64.7% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	63.6% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	63.6% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	63.6% identity		Open · Scan
M08325_2.00	NN 70-40%	CisBP	TTTTTTTTT	63.6% identity		Open · Scan
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	62.3% identity		Open · Scan
M04387_2.00	NN 70-40%	CisBP	CGTGCTCCCC	59.2% identity		Open · Scan
M07562_2.00	NN 70-40%	CisBP	GAAAAAAAC	59.2% identity		Open · Scan
M07579_2.00	NN 70-40%	CisBP	CATCTCCAGGA	59.2% identity		Open · Scan
M04475_2.00	NN 70-40%	CisBP	GATGCACGTACCGTGCCTCA	58.0% identity		Open · Scan
M08373_2.00	NN 70-40%	CisBP	CCCCCTGGCTCTTCCTCT	57.6% identity		Open · Scan
M07605_2.00	NN 70-40%	CisBP	TATTTTTTTTTATTTTTTTTTTTTTTTTTT	56.2% identity		Open · Scan
M07707_2.00	NN 70-40%	CisBP	TCCCGC	56.2% identity		Open · Scan
M08252_2.00	NN 70-40%	CisBP	CCGGCTCCAGCACCC	56.2% identity		Open · Scan
M08371_2.00	NN 70-40%	CisBP	CCAGACTTGTCCTCT	56.2% identity		Open · Scan
M07598_2.00	NN 70-40%	CisBP	CTGACAATACCAAGTGTTGAC	56.1% identity		Open · Scan
MA1600.1	NN 70-40%	JASPAR	ATACAGTCCACCCCTTTA	55.6% identity		Open · Scan
M00142_2.00	NN 70-40%	CisBP	GTGCTCCT	55.4% identity		Open · Scan
M07581_2.00	NN 70-40%	CisBP	TCCCCTGTGCTTCTCTCCCCT	55.2% identity		Open · Scan
M07689_2.00	NN 70-40%	CisBP	ACCCAGGCTCCTTCCATCTTGTGGCTC	55.2% identity		Open · Scan
M08311_2.00	NN 70-40%	CisBP	CTGGAACAGAAGGGGCGA	55.2% identity		Open · Scan
M08934_2.00	NN 70-40%	CisBP	GCTGTACCTGCTTATTAGGC	55.2% identity		Open · Scan
M07714_2.00	NN 70-40%	CisBP	AGCCCATTGGGGCCTATGCCC	55.0% identity		Open · Scan
MA1587.1	NN 70-40%	JASPAR	CCTCGACCTCCTGA	54.9% identity		Open · Scan
M07660_2.00	NN 70-40%	CisBP	CCGCGCCTACCTGAGGGCGCGGGCCTGGGG	54.8% identity		Open · Scan
M07649_2.00	NN 70-40%	CisBP	CCCCCCCCCCCCTCAGGAATGCC	54.7% identity		Open · Scan
M07777_2.00	NN 70-40%	CisBP	GCCAATTTCCGTGGTGTAAAT	54.7% identity		Open · Scan
M08375_2.00	NN 70-40%	CisBP	TTCCCCATTGGCTACTGCACCGGTCCT	54.7% identity		Open · Scan
M08944_2.00	NN 70-40%	CisBP	TACCATGCTGTTTTGATTAC	54.6% identity		Open · Scan
M08295_2.00	NN 70-40%	CisBP	CTGCTGGAATCTCCA	54.5% identity		Open · Scan
M08267_2.00	NN 70-40%	CisBP	CAGTTTCATTTTCC	54.3% identity		Open · Scan
M00782_2.00	NN 70-40%	CisBP	AGTGTGCGCTA	54.2% identity		Open · Scan
M08335_2.00	NN 70-40%	CisBP	AGTCGTTGTCTG	54.2% identity		Open · Scan
M08355_2.00	NN 70-40%	CisBP	GCGAACTCCTATTCATCC	54.2% identity		Open · Scan
MA1602.1	NN 70-40%	JASPAR	CGTCTACACGGG	54.2% identity		Open · Scan
M08917_2.00	NN 70-40%	CisBP	GCTGAGCCATGTGGGGTGCT	54.0% identity		Open · Scan
M07646_2.00	NN 70-40%	CisBP	CTTTTTTTT	53.9% identity		Open · Scan
M08291_2.00	NN 70-40%	CisBP	AATCCAGCCCTAGACTCTCCC	53.9% identity		Open · Scan
M07578_2.00	NN 70-40%	CisBP	CAACTCTCC	53.8% identity		Open · Scan
M07667_2.00	NN 70-40%	CisBP	CCGCACAGGCCCCCGGGCCCC	53.8% identity		Open · Scan
M08256_2.00	NN 70-40%	CisBP	GTGCCTT	53.7% identity		Open · Scan
M08914_2.00	NN 70-40%	CisBP	ATTTAGTCCATTTACATTTAATGT	53.5% identity		Open · Scan
M04598_2.00	NN 70-40%	CisBP	CGCTAACTCTCCACA	53.3% identity		Open · Scan
M07753_2.00	NN 70-40%	CisBP	TGCATTCCTTGGCTTGTG	53.2% identity		Open · Scan
M08860_2.00	NN 70-40%	CisBP	TCTTATAAGGGCACTAATCCCATT	53.2% identity		Open · Scan
M00149_2.00	NN 70-40%	CisBP	CGTACGCC	52.9% identity		Open · Scan
M07610_2.00	NN 70-40%	CisBP	CCTTCTTCCTCCCCCCTGCCCACC	52.8% identity		Open · Scan
M07607_2.00	NN 70-40%	CisBP	GGCTCCACG	52.7% identity		Open · Scan
M08347_2.00	NN 70-40%	CisBP	GCCCTGGGCAGC	52.7% identity		Open · Scan
M08279_2.00	NN 70-40%	CisBP	CCTCCCTCC	52.6% identity		Open · Scan
M01181_2.00	NN 70-40%	CisBP	GCGCATCCCC	52.5% identity		Open · Scan
M04621_2.00	NN 70-40%	CisBP	AGCAATTCCGCTCA	52.5% identity		Open · Scan
MA1589.1	NN 70-40%	JASPAR	TAGGAGTGGAATTGCTGGGTC	52.5% identity		Open · Scan
M04505_2.00	NN 70-40%	CisBP	AGCTTTTCCCACAC	52.4% identity		Open · Scan
M07587_2.00	NN 70-40%	CisBP	CCCCCTCCCCAGTCGAGCCCCCGC	52.3% identity		Open · Scan
M07700_2.00	NN 70-40%	CisBP	ATGTTGTGAGGAAGCCCA	52.3% identity		Open · Scan
M07588_2.00	NN 70-40%	CisBP	TCCTTCCCTCTTTCC	52.2% identity		Open · Scan
M07666_2.00	NN 70-40%	CisBP	ATCTAGCCCCTGCCTACC	52.2% identity		Open · Scan
M07650_2.00	NN 70-40%	CisBP	GGTCTATAAAAGGGGGGCCGCGGGGGGG	52.0% identity		Open · Scan
M08309_2.00	NN 70-40%	CisBP	AAAAACCCCCCTGCAGAGCCCAGCCCT	52.0% identity		Open · Scan
M07678_2.00	NN 70-40%	CisBP	CCCGCCCCCTCCTCCCCCTTCCCACCC	51.9% identity		Open · Scan
M07691_2.00	NN 70-40%	CisBP	CCTGCAGCCACCTTGGCCTTG	51.9% identity		Open · Scan
M08247_2.00	NN 70-40%	CisBP	AAAAATAACAAACGG	51.9% identity		Open · Scan
M08300_2.00	NN 70-40%	CisBP	CTGCCCAATTCAT	51.9% identity		Open · Scan
MA1594.1	NN 70-40%	JASPAR	AGGGGACATCACTACAGATCCCAC	51.9% identity		Open · Scan
M01457_2.00	NN 70-40%	CisBP	GCGCACGGAC	51.8% identity		Open · Scan
M06179_2.00	NN 70-40%	CisBP	TAAGCCTATAGA	51.8% identity		Open · Scan
M07582_2.00	NN 70-40%	CisBP	TCCCTG	51.7% identity		Open · Scan
M08395_2.00	NN 70-40%	CisBP	GCTGCCTACTCTTCC	51.7% identity		Open · Scan
M07658_2.00	NN 70-40%	CisBP	CCGCCGCAGCCGCCG	51.4% identity		Open · Scan
M07712_2.00	NN 70-40%	CisBP	ACATTTTTTTAATCTAAAAAAACATTTACA	51.4% identity		Open · Scan
M03682_2.00	NN 70-40%	CisBP	ACGCCACGCCCAGT	51.3% identity		Open · Scan
M04536_2.00	NN 70-40%	CisBP	ACGTAACCCGATACC	51.3% identity		Open · Scan
M07686_2.00	NN 70-40%	CisBP	TAGCTTGTTTCCAGCCAC	51.3% identity		Open · Scan
MA1564.1	NN 70-40%	JASPAR	GCCACGCCCCCC	51.3% identity		Open · Scan
M07593_2.00	NN 70-40%	CisBP	AGATGAAGTCACCCCTCTTAC	51.2% identity		Open · Scan
M07601_2.00	NN 70-40%	CisBP	CAGATGCCGGCACCATGCTTC	51.2% identity		Open · Scan
M00769_2.00	NN 70-40%	CisBP	ACTCCCCC	51.1% identity		Open · Scan
M00945_2.00	NN 70-40%	CisBP	CACCGCAC	51.1% identity		Open · Scan
M07761_2.00	NN 70-40%	CisBP	CTGATTATTCACCCA	51.1% identity		Open · Scan
M08255_2.00	NN 70-40%	CisBP	CTCTTCCGGT	51.1% identity		Open · Scan
M07723_2.00	NN 70-40%	CisBP	CCGCTGCTCCCTGCT	51.0% identity		Open · Scan
M07740_2.00	NN 70-40%	CisBP	TCCTGATTCCACACTCAAACATAACTTT	51.0% identity		Open · Scan
M08386_2.00	NN 70-40%	CisBP	GCCTTAAAAGCTCAGCAC	51.0% identity		Open · Scan
M00786_2.00	NN 70-40%	CisBP	TATATATAT	50.8% identity		Open · Scan
M07717_2.00	NN 70-40%	CisBP	GGCTCCGCCCCC	50.7% identity		Open · Scan
M08334_2.00	NN 70-40%	CisBP	TTTGTTTTTTTCTGATTGCTTTTTACTTAT	50.7% identity		Open · Scan
M08392_2.00	NN 70-40%	CisBP	CTTCACCTGCTGAGG	50.7% identity		Open · Scan
MA0747.1	NN 70-40%	JASPAR	GCCACGCCCACT	50.6% identity		Open · Scan
M07648_2.00	NN 70-40%	CisBP	GCTTGCAAAAAAAATTTAACTCCCAGCTC	50.5% identity		Open · Scan
M08292_2.00	NN 70-40%	CisBP	TGTATTCCTTGTCATGTGTGG	50.5% identity		Open · Scan
M08367_2.00	NN 70-40%	CisBP	GGGGTGATGACCACTCTGGCTTCTTAC	50.5% identity		Open · Scan
M00609_2.00	NN 70-40%	CisBP	GGAAGCCCTA	50.4% identity		Open · Scan
M07620_2.00	NN 70-40%	CisBP	TTGGATCTGTGGATTCATGTCTTTCAT	50.4% identity		Open · Scan
M08329_2.00	NN 70-40%	CisBP	GCTGCATAGTATTCC	50.4% identity		Open · Scan
M08399_2.00	NN 70-40%	CisBP	TACTCTGGGGCCACATGACTC	50.4% identity		Open · Scan
M07699_2.00	NN 70-40%	CisBP	GGTTTAT	50.2% identity		Open · Scan
M08342_2.00	NN 70-40%	CisBP	GCTCTGCCTCCCTCT	50.2% identity		Open · Scan
M02896_2.00	NN 70-40%	CisBP	TGCTTTCTAGGAATTCA	50.0% identity		Open · Scan
M02903_2.00	NN 70-40%	CisBP	ATGCCACGCCCCTTTTTG	50.0% identity		Open · Scan
M04590_2.00	NN 70-40%	CisBP	TGCGCTAACCATTGC	50.0% identity		Open · Scan
M07635_2.00	NN 70-40%	CisBP	AAGTTTTCTTGTATTATATCT	50.0% identity		Open · Scan
M07687_2.00	NN 70-40%	CisBP	ACAAATAAGGTTCTTGTGCCCCCTGCT	50.0% identity		Open · Scan
M07746_2.00	NN 70-40%	CisBP	CAGCTGGCGCCCAACATGGGTCCC	50.0% identity		Open · Scan
M08525_2.00	NN 70-40%	CisBP	CCCCGCA	50.0% identity		Open · Scan
MA0731.1	NN 70-40%	JASPAR	TGCTTTCTAGGAATTCA	50.0% identity		Open · Scan
MA0740.1	NN 70-40%	JASPAR	GGCCACGCCCCCTT	50.0% identity		Open · Scan

ModCRE12

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
DIMER_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:370:418_1llm_D_1	ModCRE	Homology model	CATTCGCGTCGA	Region 370-418 · 1 3D model		Open · Scan
TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:246:450_5v3j_E_1	ModCRE	Homology model	CCCCCCCACTGTGTGTCCCACAACCG	Region 246-450 · 1 3D model		Open · Scan
TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:246:450_5v3m_C_1	ModCRE	Homology model	GAGCACCAACCCCCCCACCCCGCGCG	Region 246-450 · 1 3D model		Open · Scan
TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:246:454_5wjq_D_1	ModCRE	Homology model	GTGACAGGGCCACCCCCCCCCCCGCGC	Region 246-454 · 1 3D model		Open · Scan
TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:285:395_5ei9_E_1	ModCRE	Homology model	GCCGGGCACCCCCCCGG	Region 285-395 · 1 3D model		Open · Scan
TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:297:450_2i13_A_1	ModCRE	Homology model	ATCGCTTACTGTTGTATAAAT	Region 297-450 · 1 3D model		Open · Scan
a0a0c4dgm2.af3.0	ModCRE	AlphaFold3 model	CGGCGCCTCTACCCCCCCCCCCCCG	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a0c4dgm2.af3.1	ModCRE	AlphaFold3 model	CGGGCCCCTCCCCCCCCCCCACCG	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a0c4dgm2.af3.2	ModCRE	AlphaFold3 model	TGGCAACTCTCCCCCCCCCCCCCCC	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a0c4dgm2.af3.3	ModCRE	AlphaFold3 model	CGGCGAGCCCCTACCCCCCCCCCCCCC	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a0c4dgm2.af3.4	ModCRE	AlphaFold3 model	CGGCGCCTCTACCCCCCCCCCCCCG	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a0c4dgm2.af3.5	ModCRE	AlphaFold3 model	GCGCGGCCCTTCCCCCCCCCCCACG	AlphaFold3 model · ModCRE PWM		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 462 aa

246-454

Region 246-454 6 PWM

Residues

209 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

6 active PDBs · 6 summary rows

Templates

1LLM, 2I13, 5EI9, 5V3J, 5V3M, 5WJQ

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

24 active PDB models 6 summary rows

Region 246-4546 models · 6 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:370:418_1llm_D_1	1llm	370-418	View model · PDB
Predicted = Low	TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:246:450_5v3j_E_1	5v3j	246-450	View model · PDB
Predicted = Low	TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:246:450_5v3m_C_1	5v3m	246-450	View model · PDB
Predicted = Low	TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:246:454_5wjq_D_1	5wjq	246-454	View model · PDB
Predicted = Low	TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:285:395_5ei9_E_1	5ei9	285-395	View model · PDB
Predicted = Low	TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:297:450_2i13_A_1	2i13	297-450	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
1	2i13	246:454	297	450	P:A · DNA:C,D	60.4% / 72.1%	100	View · PDB TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:297:450_2i13_A_1
5	5ei9	246:454	285	395	P:E · DNA:A,B	58.6% / 73.0%	100	View · PDB TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:285:395_5ei9_E_1
3	5v3m	246:454	246	450	P:C · DNA:A,B	46.1% / 68.4%	74	View · PDB TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:246:450_5v3m_C_1
4	5v3j	246:454	246	450	P:E · DNA:A,B	46.1% / 68.4%	74	View · PDB TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:246:450_5v3j_E_1
2	5wjq	246:454	246	454	P:D · DNA:A,B	45.7% / 67.6%	74	View · PDB TFS_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:246:454_5wjq_D_1
1	1llm	246:454	370,370	418,418	P:C,D · DNA:A,B	42.9% / 65.3%	56,57	View · PDB DIMER_tr_A0A0C4DGM2_A0A0C4DGM2_HUMAN:370:418_1llm_D_1

Full sequence / unlocalized models18 models

Source	Model	Template	Residues modeled	Actions
Predicted = Low	a0a0c4dgm2.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2.af3.5	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_dimer.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_dimer.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_dimer.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_dimer.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_dimer.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_dimer.af3.5	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_monomer.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_monomer.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_monomer.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_monomer.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_monomer.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0c4dgm2_monomer.af3.5	-	Full sequence / not localized	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
13-101	PF02023	SCAN domain	No overlap with loaded model regions
288-310	PF00096	Zinc finger, C2H2 type	overlaps 246-454
316-338	PF00096	Zinc finger, C2H2 type	overlaps 246-454
344-366	PF00096	Zinc finger, C2H2 type	overlaps 246-454
372-394	PF00096	Zinc finger, C2H2 type	overlaps 246-454
400-422	PF00096	Zinc finger, C2H2 type	overlaps 246-454
430-450	PF00096	Zinc finger, C2H2 type	overlaps 246-454