ModCRE DB

Transcription factor

A0A0C4DGQ3 - ZNF556

Zinc finger protein 556

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 455 aa

33 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)22
MotifPredictionSourceDNA bindingSupportLogoActions
M00958_2.00 NN 70-40% CisBP CGGCATCCC 59.2% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 58.8% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.0% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 58.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 57.6% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 57.4% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 56.4% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 55.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 55.2% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.2% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 54.1% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.1% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 51.7% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 51.6% identity Open · Scan
M07762_2.00 NN 70-40% CisBP GCCGCGCACAGGCTTCTAGCC 51.5% identity Open · Scan
M08917_2.00 NN 70-40% CisBP GCTGAGCCATGTGGGGTGCT 51.5% identity Open · Scan
M00764_2.00 NN 70-40% CisBP GTCTACAC 51.4% identity Open · Scan
M08935_2.00 NN 70-40% CisBP CCTCCTCCCTCAGACC 51.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.0% identity Open · Scan
M07733_2.00 NN 70-40% CisBP TCTTTCTCTCTCTCC 50.0% identity Open · Scan
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 50.0% identity Open · Scan
ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:142:404_5wjq_D_1 ModCRE Homology model CCCCCCCCCCGCGGGGGCACGGGGCCGG Region 142-404 · 1 3D model Open · Scan
TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:146:407_5v3j_E_1 ModCRE Homology model TCCCCCCGGTGGGTAGCCCACTTC Region 146-407 · 1 3D model Open · Scan
TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:146:407_5v3m_C_1 ModCRE Homology model CCACCCCCTCGGGGGGGCCCCCTTA Region 146-407 · 1 3D model Open · Scan
TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:170:312_6ml7_A_1 ModCRE Homology model AAGCTAGGGTGAGTAGCCG Region 170-312 · 1 3D model Open · Scan
TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:183:336_2i13_A_1 ModCRE Homology model ACTCAGCTACTTCTCCTTCAT Region 183-336 · 1 3D model Open · Scan
a0a0c4dgq3.af3.0 ModCRE AlphaFold3 model GGCACAGCAGGGGGGGCGTCCCCCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq3.af3.1 ModCRE AlphaFold3 model GAGACAGCAGGGGCCGCGTCGGGCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq3.af3.2 ModCRE AlphaFold3 model GGCACAGCAGGGGGGGCGTCCCCCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq3.af3.3 ModCRE AlphaFold3 model GGGACTGCAGCGGGGGCGTCCGCGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq3.af3.4 ModCRE AlphaFold3 model GGGACTGCACGGGGGGCGTCGGCCGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq3.af3.5 ModCRE AlphaFold3 model GGATAAGAACCGGGGGGGTCGGGGGG AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 455 aa
142-407

Region 142-407 5 PWM

Residues
266 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF13894 · C2H2-type zinc finger PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 6ML7
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 142-4076 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:172:220_1llm_D_1 1llm 172-220 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:142:404_5wjq_D_1 5wjq 142-404 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:146:407_5v3j_E_1 5v3j 146-407 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:146:407_5v3m_C_1 5v3m 146-407 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:170:312_6ml7_A_1 6ml7 170-312 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:183:336_2i13_A_1 2i13 183-336 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 142:407 183 336 P:A · DNA:C,D 48.1% / 60.4% 100 View · PDB TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:183:336_2i13_A_1
1 1llm 142:407 172,172 220,220 P:C,D · DNA:A,B 46.9% / 65.3% 56,57 View · PDB DIMER_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:172:220_1llm_D_1
1 5wjq 142:407 142 404 P:D · DNA:A,B 41.3% / 58.3% 93 View · PDB TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:142:404_5wjq_D_1
2 5v3m 142:407 146 407 P:C · DNA:A,B 41.1% / 55.9% 94 View · PDB TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:146:407_5v3m_C_1
3 5v3j 142:407 146 407 P:E · DNA:A,B 41.1% / 55.9% 94 View · PDB TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:146:407_5v3j_E_1
5 6ml7 142:407 170 312 P:A · DNA:E,F 38.5% / 58.0% 100 View · PDB TFS_tr_A0A0C4DGQ3_A0A0C4DGQ3_HUMAN:170:312_6ml7_A_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a0c4dgq3.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq3.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq3.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq3.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq3.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq3.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-44PF01352KRAB boxNo overlap with loaded model regions
146-168PF00096Zinc finger, C2H2 typeoverlaps 142-407
174-196PF00096Zinc finger, C2H2 typeoverlaps 142-407
202-224PF00096Zinc finger, C2H2 typeoverlaps 142-407
230-252PF13894C2H2-type zinc fingeroverlaps 142-407
258-280PF00096Zinc finger, C2H2 typeoverlaps 142-407
286-308PF00096Zinc finger, C2H2 typeoverlaps 142-407
314-336PF00096Zinc finger, C2H2 typeoverlaps 142-407