ModCRE DB

Transcription factor

A0A0C4DGQ9 - ZNF563

Zinc finger protein 563

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 229 aa

32 Generated PWM 24 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)20
MotifPredictionSourceDNA bindingSupportLogoActions
M07731_2.00 NN 70-40% CisBP TTTCCCAGCAGCAACAGCACCGCCCCCCCC 69.5% identity Open · Scan
M07650_2.00 NN 70-40% CisBP GGTCTATAAAAGGGGGGCCGCGGGGGGG 69.2% identity Open · Scan
M07659_2.00 NN 70-40% CisBP GTCTTCCAAGTAGCTGGTGTT 69.1% identity Open · Scan
M07717_2.00 NN 70-40% CisBP GGCTCCGCCCCC 65.9% identity Open · Scan
M08312_2.00 NN 70-40% CisBP ATTGGGTTTCTGTTGCTT 64.8% identity Open · Scan
M07756_2.00 NN 70-40% CisBP GCGGCA 62.5% identity Open · Scan
M07646_2.00 NN 70-40% CisBP CTTTTTTTT 61.5% identity Open · Scan
M07720_2.00 NN 70-40% CisBP TGTGTGTGTGGGCATGTGTGTGTGCGAGT 57.8% identity Open · Scan
M07770_2.00 NN 70-40% CisBP CTTGGACTT 57.0% identity Open · Scan
MA1588.1 NN 70-40% JASPAR GAATTCTTGGTTGAC 57.0% identity Open · Scan
M08255_2.00 NN 70-40% CisBP CTCTTCCGGT 55.0% identity Open · Scan
M04653_2.00 NN 70-40% CisBP GGTACGGTTGTCCATGTTGCAA 53.6% identity Open · Scan
M07627_2.00 NN 70-40% CisBP CAGTCACCTTCTGG 52.5% identity Open · Scan
M08397_2.00 NN 70-40% CisBP ATGCAACAGGTG 52.3% identity Open · Scan
MA0743.1 NN 70-40% JASPAR GAGCAACAGGTGGTT 52.3% identity Open · Scan
M07628_2.00 NN 70-40% CisBP AGTGGTTCTGCTTCT 52.0% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 51.6% identity Open · Scan
M10203_2.00 NN 70-40% CisBP CCCCAAACCACCCC 51.4% identity Open · Scan
MA0073.1 NN 70-40% JASPAR CCCCAAACCACCCCCCCCCA 51.4% identity Open · Scan
M04434_2.00 NN 70-40% CisBP GCTATAGGTGA 50.0% identity Open · Scan
ModCRE12
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:150:191_1llm_D_1 ModCRE Homology model CCCCGGCCCGGG Region 150-191 · 1 3D model Open · Scan
TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:129:200_6ml5_A_1 ModCRE Homology model ATATTTTGTTGTTTTA Region 129-200 · 1 3D model Open · Scan
TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:129:200_6ml6_A_1 ModCRE Homology model CAAATTTAAAAGTTGA Region 129-200 · 1 3D model Open · Scan
TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:129:200_6ml7_A_1 ModCRE Homology model ATAATTTCTAGGGCGA Region 129-200 · 1 3D model Open · Scan
TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:131:198_5wjq_D_1 ModCRE Homology model CAAAACTGCGTTTGG Region 131-198 · 1 3D model Open · Scan
TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:131:200_2i13_A_1 ModCRE Homology model ATTTTACTCATTAAGAA Region 131-200 · 1 3D model Open · Scan
a0a0c4dgq9.af3.0 ModCRE AlphaFold3 model AAAAGCCCCCT AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq9.af3.1 ModCRE AlphaFold3 model CAACGTCGCGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq9.af3.2 ModCRE AlphaFold3 model AAAAGCCCCCG AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq9.af3.3 ModCRE AlphaFold3 model AGGGGCCTTTC AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq9.af3.4 ModCRE AlphaFold3 model AGGGGGCCGGCG AlphaFold3 model · ModCRE PWM Open · Scan
a0a0c4dgq9.af3.5 ModCRE AlphaFold3 model TGCGTGCC AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 229 aa
129-200

Region 129-200 6 PWM

Residues
72 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5WJQ, 6ML5, 6ML6, 6ML7
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
24 active PDB models 6 summary rows
Region 129-2006 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:150:191_1llm_D_1 1llm 150-191 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:129:200_6ml5_A_1 6ml5 129-200 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:129:200_6ml6_A_1 6ml6 129-200 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:129:200_6ml7_A_1 6ml7 129-200 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:131:198_5wjq_D_1 5wjq 131-198 View model · PDB
Predicted = Low TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:131:200_2i13_A_1 2i13 131-200 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 5wjq 115:216 131 198 P:D · DNA:A,B 44.1% / 54.4% 23 View · PDB TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:131:198_5wjq_D_1
1 2i13 115:216 131 200 P:A · DNA:C,D 42.9% / 58.6% 46 View · PDB TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:131:200_2i13_A_1
3 6ml5 115:216 129 200 P:A · DNA:E,F 40.3% / 52.8% 50 View · PDB TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:129:200_6ml5_A_1
4 6ml7 115:216 129 200 P:A · DNA:E,F 40.3% / 52.8% 50 View · PDB TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:129:200_6ml7_A_1
5 6ml6 115:216 129 200 P:A · DNA:E,F 40.3% / 52.8% 50 View · PDB TFS_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:129:200_6ml6_A_1
1 1llm 115:216 150,150 191,191 P:C,D · DNA:A,B 33.3% / 50.0% 48,49 View · PDB DIMER_tr_A0A0C4DGQ9_A0A0C4DGQ9_HUMAN:150:191_1llm_D_1
Full sequence / unlocalized models18 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a0c4dgq9.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_dimer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_dimer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_dimer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_dimer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_dimer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_dimer.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_monomer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_monomer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_monomer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_monomer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_monomer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0c4dgq9_monomer.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-41PF01352KRAB boxNo overlap with loaded model regions
169-188PF00096Zinc finger, C2H2 typeoverlaps 129-200