ModCRE DB

Transcription factor

A0A0D9SEJ8 - ZNF280B

Zinc finger protein 280B

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 543 aa

17 Generated PWM 17 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)1
MotifPredictionSourceDNA bindingSupportLogoActions
M08332_2.00 NN 70-40% CisBP TCTCTCCAGTGTGAATTCTCTGAT 66.0% identity Open · Scan
ModCRE16
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml4_A_1 ModCRE Homology model GGCCGCGCGGGCCAGTGCC Region 344-478 · 1 3D model Open · Scan
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml5_A_1 ModCRE Homology model GCCCGCGCGAGCGCCTGCT Region 344-478 · 1 3D model Open · Scan
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml6_A_1 ModCRE Homology model GGCTGCGCCGGCATGCGCC Region 344-478 · 1 3D model Open · Scan
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml7_A_1 ModCRE Homology model GGCCCTGCGAGCACATGGT Region 344-478 · 1 3D model Open · Scan
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:345:454_6ml3_A_1 ModCRE Homology model AGTTAAAAAGAAACGCCGC Region 345-454 · 1 3D model Open · Scan
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:345:480_5v3j_E_1 ModCRE Homology model TTTTGTTTGGGGGTGT Region 345-480 · 1 3D model Open · Scan
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:345:480_5v3m_C_1 ModCRE Homology model TTCCTGACTCTCGAAAT Region 345-480 · 1 3D model Open · Scan
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:345:480_5wjq_D_1 ModCRE Homology model GGCCTGGGGGGCCGTT Region 345-480 · 1 3D model Open · Scan
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:375:479_6e93_A_1 ModCRE Homology model CTCCCGCGCGGAATATTC Region 375-479 · 1 3D model Open · Scan
TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:375:479_6e94_A_1 ModCRE Homology model GACCGGCCCGGGGGATTC Region 375-479 · 1 3D model Open · Scan
a0a0d9sej8.af3.0 ModCRE AlphaFold3 model AGAATATTACCCCTATTT AlphaFold3 model · ModCRE PWM Open · Scan
a0a0d9sej8.af3.1 ModCRE AlphaFold3 model AGAATATTACCCCTATTT AlphaFold3 model · ModCRE PWM Open · Scan
a0a0d9sej8.af3.2 ModCRE AlphaFold3 model GTAATTATACCCTTT AlphaFold3 model · ModCRE PWM Open · Scan
a0a0d9sej8.af3.3 ModCRE AlphaFold3 model AAAGGCTTAAAAAT AlphaFold3 model · ModCRE PWM Open · Scan
a0a0d9sej8.af3.4 ModCRE AlphaFold3 model ATGGGAGCATAAATAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a0d9sej8.af3.5 ModCRE AlphaFold3 model TTTTTGGCCTTAA AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 543 aa
344-483

Region 344-483 10 PWM

Residues
140 aa
Domains
No overlapping PFAM annotation recorded
3D models
11 active PDBs · 6 summary rows
Templates
1LLM, 5V3J, 5V3M, 5WJQ, 6E93, 6E94, 6ML3, 6ML4, ...
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
17 active PDB models 6 summary rows
Region 344-48311 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:430:483_1llm_D_1 1llm 430-483 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml4_A_1 6ml4 344-478 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml5_A_1 6ml5 344-478 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml6_A_1 6ml6 344-478 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml7_A_1 6ml7 344-478 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:345:454_6ml3_A_1 6ml3 345-454 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:345:480_5v3j_E_1 5v3j 345-480 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:345:480_5v3m_C_1 5v3m 345-480 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:345:480_5wjq_D_1 5wjq 345-480 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:375:479_6e93_A_1 6e93 375-479 View model · PDB
Predicted = Low TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:375:479_6e94_A_1 6e94 375-479 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6ml3 332:483 345 454 P:A · DNA:E,F 34.8% / 44.6% 91 View · PDB TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:345:454_6ml3_A_1
2 6ml7 332:483 344 478 P:A · DNA:E,F 29.6% / 40.7% 90 View · PDB TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml7_A_1
3 6ml6 332:483 344 478 P:A · DNA:E,F 29.6% / 40.7% 90 View · PDB TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml6_A_1
4 6ml4 332:483 344 478 P:A · DNA:E,F 29.6% / 40.7% 90 View · PDB TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml4_A_1
5 6ml5 332:483 344 478 P:A · DNA:E,F 29.6% / 40.7% 91 View · PDB TFS_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:344:478_6ml5_A_1
1 1llm 332:483 430,430 483,483 P:C,D · DNA:A,B 25.9% / 38.9% 62,63 View · PDB DIMER_tr_A0A0D9SEJ8_A0A0D9SEJ8_HUMAN:430:483_1llm_D_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a0d9sej8.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0d9sej8.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0d9sej8.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0d9sej8.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0d9sej8.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0d9sej8.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
45-226PF13836Domain of unknown function (DUF4195)No overlap with loaded model regions