Transcription factor

A0A0D9SGD6 - ZMYND11

Zinc finger MYND domain-containing protein 11

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 601 aa

9 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE9

Motif	Prediction	Source	DNA binding	Support	Actions
TFS_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:21:77_7y43_A_1	ModCRE	Homology model	GCCGCGCCGCGA	Region 21-77 · 1 3D model	Open · Scan
TFS_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:21:77_8h7a_A_1	ModCRE	Homology model	TTAAAAAAAAA	Region 21-77 · 1 3D model	Open · Scan
TFS_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:21:77_8h7a_B_1	ModCRE	Homology model	TTGCGCGCTG	Region 21-77 · 1 3D model	Open · Scan
a0a0d9sgd6.af3.0	ModCRE	AlphaFold3 model	TTAACGTGCGTGGTGCAAACCCGCGAGG	AlphaFold3 model · ModCRE PWM	Open · Scan
a0a0d9sgd6.af3.1	ModCRE	AlphaFold3 model	TTAACGTGCGTGGTGCAAACCCGCGAGG	AlphaFold3 model · ModCRE PWM	Open · Scan
a0a0d9sgd6.af3.2	ModCRE	AlphaFold3 model	TAAATGCACGCGCGCCGC	AlphaFold3 model · ModCRE PWM	Open · Scan
a0a0d9sgd6.af3.3	ModCRE	AlphaFold3 model	TTGCTTATCAGCAGACATATGA	AlphaFold3 model · ModCRE PWM	Open · Scan
a0a0d9sgd6.af3.4	ModCRE	AlphaFold3 model	GGCACCCCTAGGGGG	AlphaFold3 model · ModCRE PWM	Open · Scan
a0a0d9sgd6.af3.5	ModCRE	AlphaFold3 model	CCCCCAGGGCCCCCCT	AlphaFold3 model · ModCRE PWM	Open · Scan

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 601 aa

21-77

217-252

Scan this region Show models

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

10 active PDB models 4 summary rows

Region 21-773 models · 3 summary rows

				Actions
Predicted = Low	TFS_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:21:77_7y43_A_1	7y43	21-77	View model · PDB
Predicted = Low	TFS_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:21:77_8h7a_A_1	8h7a	21-77	View model · PDB
Predicted = Low	TFS_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:21:77_8h7a_B_1	8h7a	21-77	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
1	8h7a	21:77	21	77	P:B · DNA:C,D	36.8% / 54.4%	74	View · PDB TFS_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:21:77_8h7a_B_1
2	8h7a	21:77	21	77	P:A · DNA:C,D	36.8% / 54.4%	74	View · PDB TFS_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:21:77_8h7a_A_1
3	7y43	21:77	21	77	P:A · DNA:B,C	36.8% / 54.4%	72	View · PDB TFS_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:21:77_7y43_A_1

Region 217-2521 model · 1 summary row

				Actions
Predicted = Low	DIMER_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:221:252_2c9n_Y_1	2c9n	221-252	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
1	2c9n	108:152	221,217	252,252	P:Y,Z · DNA:A,B	37.5% / 46.9%	54,59	View · PDB DIMER_tr_A0A0D9SGD6_A0A0D9SGD6_HUMAN:221:252_2c9n_Y_1

Full sequence / unlocalized models6 models

Source	Model	Template	Residues modeled	Actions
Predicted = Low	a0a0d9sgd6.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0d9sgd6.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0d9sgd6.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0d9sgd6.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0d9sgd6.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a0d9sgd6.af3.5	-	Full sequence / not localized	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
19-67	PF21524	SAM domain-containing protein 1, WH domain	overlaps 21-77
182-237	PF00439	Bromodomain	overlaps 217-252
281-349	PF00855	PWWP domain	No overlap with loaded model regions
465-517	PF23461	ZMYND11 protein coiled-coil	No overlap with loaded model regions
562-597	PF24324	ZMYND11/ZMYD8, MYND zinc finger	No overlap with loaded model regions