ModCRE DB

Transcription factor

A0A0K0KMI2 - POU5F1

POU class 5 homeobox 1 transcript variant OCT4B4

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 145 aa

29 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)12
MotifPredictionSourceDNA bindingSupportLogoActions
M05501_2.00 NN 70+% CisBP AATTATGCTAATTAAG 96.8% identity Open · Scan
MA0792.1 NN 70+% JASPAR TATGCAAAT 96.8% identity Open · Scan
MA1115.1 NN 70+% JASPAR ATATGCAAATT 96.8% identity Open · Scan
M08032_2.00 NN 70+% CisBP CCATTGTTATGCAAA 96.4% identity Open · Scan
MA0142.1 NN 70+% JASPAR CTTTGTTATGCAAAT 78.0% identity Open · Scan
M02240_2.00 NN 70+% CisBP ATAATGAA 77.2% identity Open · Scan
M05500_2.00 NN 70+% CisBP TTATGCAAATGAG 77.2% identity Open · Scan
MA0789.1 NN 70+% JASPAR TATGCAAAT 77.2% identity Open · Scan
M00553_2.00 NN 70+% CisBP ATGCATAA 72.7% identity Open · Scan
M02236_2.00 NN 70+% CisBP CTAATTAAC 72.7% identity Open · Scan
MA0787.1 NN 70+% JASPAR TTATGCAAATTA 72.7% identity Open · Scan
MA0788.1 NN 70+% JASPAR ATTATGCTAATTT 72.7% identity Open · Scan
Nearest Neighbor (70% - 40%)17
MotifPredictionSourceDNA bindingSupportLogoActions
M02235_2.00 NN 70-40% CisBP CTAATTAA 69.5% identity Open · Scan
M02245_2.00 NN 70-40% CisBP ATGCTAATTA 69.5% identity Open · Scan
M07542_2.00 NN 70-40% CisBP TGCATA 68.1% identity Open · Scan
M00549_2.00 NN 70-40% CisBP GATAATGAG 65.2% identity Open · Scan
MA0627.1 NN 70-40% JASPAR TTGTATGCAAATTAGA 65.2% identity Open · Scan
MA0627.2 NN 70-40% JASPAR AATATGCAAATAA 65.2% identity Open · Scan
MA0790.1 NN 70-40% JASPAR ATGAATAATTAATG 65.2% identity Open · Scan
MA0683.1 NN 70-40% JASPAR ATGCATAATTAATGAG 55.1% identity Open · Scan
MA0791.1 NN 70-40% JASPAR ATGCATAATTAATGAG 55.1% identity Open · Scan
M09227_2.00 NN 70-40% CisBP CTCATGAATATTCAAG 51.5% identity Open · Scan
MA0786.1 NN 70-40% JASPAR TTATGCAAATTA 51.5% identity Open · Scan
M00548_2.00 NN 70-40% CisBP GATAATTAA 50.0% identity Open · Scan
M02239_2.00 NN 70-40% CisBP TATGCAAATT 50.0% identity Open · Scan
M02242_2.00 NN 70-40% CisBP GTATAATTAG 50.0% identity Open · Scan
M02243_2.00 NN 70-40% CisBP ATAATGCATA 50.0% identity Open · Scan
M10829_2.00 NN 70-40% CisBP ATATAATTATGCAAATTAAAAGA 50.0% identity Open · Scan
MA0785.1 NN 70-40% JASPAR AATATGCAAATT 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 145 aa
52-80

Region 52-80 0 PWM

Residues
29 aa
Domains
PF00157 · Pou domain - N-terminal to homeobox domain
3D models
1 active PDB
Templates
3L1P
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 52-801 model
Actions
Predicted = Low DIMER_A0A0K0KMI2:52:80_3l1p_A_1 3l1p 52-80 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
57-80PF00157Pou domain - N-terminal to homeobox domainoverlaps 52-80