ModCRE DB

Transcription factor

A0A0K0KMS3 - POU5F1

POU class 5 homeobox 1 transcript variant OCT4B6

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 121 aa

33 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)14
MotifPredictionSourceDNA bindingSupportLogoActions
MA1115.1 NN 70+% JASPAR ATATGCAAATT 97.6% identity Open · Scan
M08032_2.00 NN 70+% CisBP CCATTGTTATGCAAA 97.3% identity Open · Scan
MA0792.1 NN 70+% JASPAR TATGCAAAT 95.2% identity Open · Scan
MA0142.1 NN 70+% JASPAR CTTTGTTATGCAAAT 82.3% identity Open · Scan
M02240_2.00 NN 70+% CisBP ATAATGAA 75.0% identity Open · Scan
M05500_2.00 NN 70+% CisBP TTATGCAAATGAG 75.0% identity Open · Scan
MA0789.1 NN 70+% JASPAR TATGCAAAT 75.0% identity Open · Scan
M05501_2.00 NN 70+% CisBP AATTATGCTAATTAAG 72.9% identity Open · Scan
M00553_2.00 NN 70+% CisBP ATGCATAA 71.8% identity Open · Scan
M02236_2.00 NN 70+% CisBP CTAATTAAC 71.8% identity Open · Scan
M09227_2.00 NN 70+% CisBP CTCATGAATATTCAAG 71.8% identity Open · Scan
MA0786.1 NN 70+% JASPAR TTATGCAAATTA 71.8% identity Open · Scan
MA0787.1 NN 70+% JASPAR TTATGCAAATTA 71.8% identity Open · Scan
MA0788.1 NN 70+% JASPAR ATTATGCTAATTT 71.8% identity Open · Scan
Nearest Neighbor (70% - 40%)19
MotifPredictionSourceDNA bindingSupportLogoActions
M02235_2.00 NN 70-40% CisBP CTAATTAA 69.6% identity Open · Scan
M07542_2.00 NN 70-40% CisBP TGCATA 68.7% identity Open · Scan
M00548_2.00 NN 70-40% CisBP GATAATTAA 66.6% identity Open · Scan
M02239_2.00 NN 70-40% CisBP TATGCAAATT 66.6% identity Open · Scan
M02242_2.00 NN 70-40% CisBP GTATAATTAG 66.6% identity Open · Scan
M02243_2.00 NN 70-40% CisBP ATAATGCATA 66.6% identity Open · Scan
M02245_2.00 NN 70-40% CisBP ATGCTAATTA 66.6% identity Open · Scan
M06556_2.00 NN 70-40% CisBP TATGCAAATTAG 66.6% identity Open · Scan
M10829_2.00 NN 70-40% CisBP ATATAATTATGCAAATTAAAAGA 66.6% identity Open · Scan
MA0785.1 NN 70-40% JASPAR AATATGCAAATT 66.6% identity Open · Scan
M00549_2.00 NN 70-40% CisBP GATAATGAG 63.6% identity Open · Scan
MA0507.1 NN 70-40% JASPAR TTCATTTGCATAT 63.6% identity Open · Scan
MA0627.1 NN 70-40% JASPAR TTGTATGCAAATTAGA 63.6% identity Open · Scan
MA0627.2 NN 70-40% JASPAR AATATGCAAATAA 63.6% identity Open · Scan
MA0790.1 NN 70-40% JASPAR ATGAATAATTAATG 61.2% identity Open · Scan
M00802_2.00 NN 70-40% CisBP ATTATTAATA 54.5% identity Open · Scan
MA0683.1 NN 70-40% JASPAR ATGCATAATTAATGAG 54.0% identity Open · Scan
MA0791.1 NN 70-40% JASPAR ATGCATAATTAATGAG 54.0% identity Open · Scan
MA0784.1 NN 70-40% JASPAR AATATGCAAATTAG 51.5% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 121 aa
39-77

Region 39-77 0 PWM

Residues
39 aa
Domains
PF00157 · Pou domain - N-terminal to homeobox domain
3D models
1 active PDB
Templates
3L1P
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 39-771 model
Actions
Predicted = Low DIMER_A0A0K0KMS3:39:77_3l1p_A_1 3l1p 39-77 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
44-77PF00157Pou domain - N-terminal to homeobox domainoverlaps 39-77