ModCRE DB

Transcription factor

A0A0M3L9V7 - CDX2

Homeobox protein miniCDX2 variant

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 144 aa

111 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)10
MotifPredictionSourceDNA bindingSupportLogoActions
MA0465.1 NN 70+% JASPAR AAGCCATAAAA 98.4% identity Open · Scan
M09186_2.00 NN 70+% CisBP ACATAAAT 93.0% identity Open · Scan
M05019_2.00 NN 70+% CisBP GGTCGTAAAAC 91.2% identity Open · Scan
MA0878.1 NN 70+% JASPAR GCAATAAAA 91.2% identity Open · Scan
M09193_2.00 NN 70+% CisBP TTTTATGGCCTT 87.9% identity Open · Scan
M10761_2.00 NN 70+% CisBP CATAAAT 87.0% identity Open · Scan
M02211_2.00 NN 70+% CisBP TTAATTAC 86.5% identity Open · Scan
MA1473.1 NN 70+% JASPAR GGCAATAAAAC 84.2% identity Open · Scan
M06224_2.00 NN 70+% CisBP ATCATAAAA 82.1% identity Open · Scan
M06227_2.00 NN 70+% CisBP TTAATTAT 70.1% identity Open · Scan
Nearest Neighbor (70% - 40%)101
MotifPredictionSourceDNA bindingSupportLogoActions
MA1504.1 NN 70-40% JASPAR GTCATTAA 68.6% identity Open · Scan
M09206_2.00 NN 70-40% CisBP CATTAATCAA 66.6% identity Open · Scan
MA1496.1 NN 70-40% JASPAR GTCATTAG 66.6% identity Open · Scan
MA1501.1 NN 70-40% JASPAR GGTAATTAAC 66.6% identity Open · Scan
M09204_2.00 NN 70-40% CisBP TTAATGGC 64.9% identity Open · Scan
MA0158.1 NN 70-40% JASPAR CACTAATT 64.9% identity Open · Scan
MA0904.1 NN 70-40% JASPAR ACGGTAATTAGCTCAT 64.9% identity Open · Scan
MA0904.2 NN 70-40% JASPAR GTAATTAC 64.9% identity Open · Scan
MA1499.1 NN 70-40% JASPAR ATCATTAG 64.9% identity Open · Scan
MA1507.1 NN 70-40% JASPAR ATCATTAG 64.9% identity Open · Scan
M06248_2.00 NN 70-40% CisBP TAATTGCC 64.8% identity Open · Scan
M00494_2.00 NN 70-40% CisBP TTAATTACC 63.1% identity Open · Scan
MA1497.1 NN 70-40% JASPAR GGTAATTAAC 63.1% identity Open · Scan
MA1500.1 NN 70-40% JASPAR TTAATTAC 63.1% identity Open · Scan
M00392_2.00 NN 70-40% CisBP TTAATTAC 62.7% identity Open · Scan
M06549_2.00 NN 70-40% CisBP TTAATGA 62.7% identity Open · Scan
M09680_2.00 NN 70-40% CisBP TTAATTA 62.7% identity Open · Scan
M00422_2.00 NN 70-40% CisBP TTAATGA 61.4% identity Open · Scan
M00476_2.00 NN 70-40% CisBP TTAATGGCC 61.4% identity Open · Scan
M03799_2.00 NN 70-40% CisBP GTAATTAC 61.4% identity Open · Scan
MA1498.1 NN 70-40% JASPAR GCAATTAC 61.4% identity Open · Scan
MA0594.1 NN 70-40% JASPAR GCCATAAATCA 59.0% identity Open · Scan
MA0594.2 NN 70-40% JASPAR GTCGTAAACG 59.0% identity Open · Scan
M02166_2.00 NN 70-40% CisBP CTAATTAC 58.9% identity Open · Scan
M00410_2.00 NN 70-40% CisBP TTTTATGACC 57.5% identity Open · Scan
MA1503.1 NN 70-40% JASPAR GTCGTAAAAT 57.5% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 57.4% identity Open · Scan
M05057_2.00 NN 70-40% CisBP TTAATTAC 57.4% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 57.4% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 57.4% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 57.4% identity Open · Scan
M02150_2.00 NN 70-40% CisBP TTAATTAA 57.3% identity Open · Scan
MA0485.1 NN 70-40% JASPAR GGCCATAAATCAC 56.9% identity Open · Scan
MA0485.2 NN 70-40% JASPAR GTCGTAAAAT 56.9% identity Open · Scan
M00391_2.00 NN 70-40% CisBP TTAATTGCC 56.8% identity Open · Scan
MA0910.1 NN 70-40% JASPAR TAAATAATTAATGGCTA 56.8% identity Open · Scan
MA1502.1 NN 70-40% JASPAR GCAATTAC 56.8% identity Open · Scan
MA1505.1 NN 70-40% JASPAR GTAATTAC 56.8% identity Open · Scan
MA0907.1 NN 70-40% JASPAR GCTCGTAAAAA 56.1% identity Open · Scan
M09582_2.00 NN 70-40% CisBP ATGATTGATG 56.0% identity Open · Scan
M03253_2.00 NN 70-40% CisBP TTTTTATTAC 55.9% identity Open · Scan
MA0132.1 NN 70-40% JASPAR CTAATT 55.9% identity Open · Scan
MA0132.2 NN 70-40% JASPAR GTAATTAG 55.9% identity Open · Scan
MA0905.1 NN 70-40% JASPAR GTCGTAAAAT 55.9% identity Open · Scan
M02205_2.00 NN 70-40% CisBP CATTAATTACC 55.5% identity Open · Scan
M02214_2.00 NN 70-40% CisBP AATAATTATA 55.3% identity Open · Scan
M05105_2.00 NN 70-40% CisBP GTCGTAAAAT 55.3% identity Open · Scan
MA0913.1 NN 70-40% JASPAR GCAATAAAAA 55.3% identity Open · Scan
MA0913.2 NN 70-40% JASPAR GCAATAAAAC 55.3% identity Open · Scan
M05312_2.00 NN 70-40% CisBP TTAACGAC 55.1% identity Open · Scan
MA0910.2 NN 70-40% JASPAR GCAATTAC 55.1% identity Open · Scan
M01250_2.00 NN 70-40% CisBP TCAATAATTG 55.0% identity Open · Scan
M04959_2.00 NN 70-40% CisBP GTAATTAC 55.0% identity Open · Scan
M09196_2.00 NN 70-40% CisBP TTGATGGATG 55.0% identity Open · Scan
MA1495.1 NN 70-40% JASPAR GTAATTAC 55.0% identity Open · Scan
MA0889.1 NN 70-40% JASPAR ACTAATTAGC 54.5% identity Open · Scan
M06264_2.00 NN 70-40% CisBP GCTAATTA 54.3% identity Open · Scan
M05394_2.00 NN 70-40% CisBP GGTCGTAAAAC 54.2% identity Open · Scan
M09170_2.00 NN 70-40% CisBP TCATAAATCATC 54.2% identity Open · Scan
MA0899.1 NN 70-40% JASPAR GGTAATAAAAA 54.2% identity Open · Scan
M00474_2.00 NN 70-40% CisBP TTTATGACC 53.9% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 53.9% identity Open · Scan
MA0911.1 NN 70-40% JASPAR GGTCGTAAAATT 53.9% identity Open · Scan
M00469_2.00 NN 70-40% CisBP TTAATTACC 53.7% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 53.7% identity Open · Scan
M06329_2.00 NN 70-40% CisBP CACTAATTA 53.7% identity Open · Scan
MA0893.1 NN 70-40% JASPAR ACTAATTAAA 53.7% identity Open · Scan
M06232_2.00 NN 70-40% CisBP TTAATGA 53.5% identity Open · Scan
MA0903.1 NN 70-40% JASPAR ACTAATTAGC 53.5% identity Open · Scan
M09214_2.00 NN 70-40% CisBP GCATTAATCAA 53.4% identity Open · Scan
M06544_2.00 NN 70-40% CisBP GTAATTA 52.9% identity Open · Scan
M00462_2.00 NN 70-40% CisBP CTAATTG 52.7% identity Open · Scan
MA0890.1 NN 70-40% JASPAR ACCAATTAGC 52.7% identity Open · Scan
MA0650.1 NN 70-40% JASPAR CCAATAAAAA 52.6% identity Open · Scan
M02050_2.00 NN 70-40% CisBP TAATAATT 52.5% identity Open · Scan
M06900_2.00 NN 70-40% CisBP TCAATAATTAA 52.5% identity Open · Scan
M06910_2.00 NN 70-40% CisBP TCAATAATTGA 52.5% identity Open · Scan
M06914_2.00 NN 70-40% CisBP ACAATAATTGA 52.5% identity Open · Scan
MA1506.1 NN 70-40% JASPAR GGTCGTAAAAC 52.5% identity Open · Scan
M00532_2.00 NN 70-40% CisBP TTAATGACC 52.1% identity Open · Scan
M02179_2.00 NN 70-40% CisBP GCTAATTAC 51.7% identity Open · Scan
MA0876.1 NN 70-40% JASPAR CCAATTAA 51.7% identity Open · Scan
M06219_2.00 NN 70-40% CisBP GTTAATCC 51.0% identity Open · Scan
M06924_2.00 NN 70-40% CisBP AAACCAATAATTGAAAATTAT 51.0% identity Open · Scan
M03815_2.00 NN 70-40% CisBP TTAATTAG 50.9% identity Open · Scan
M05392_2.00 NN 70-40% CisBP GTTAAGTGC 50.9% identity Open · Scan
M06312_2.00 NN 70-40% CisBP TTAATTA 50.9% identity Open · Scan
M10754_2.00 NN 70-40% CisBP CAAGTGCGTG 50.9% identity Open · Scan
MA0027.1 NN 70-40% JASPAR AAGTAGTGCCC 50.9% identity Open · Scan
MA0027.2 NN 70-40% JASPAR CTAATTAG 50.9% identity Open · Scan
MA0896.1 NN 70-40% JASPAR ACAAGCAATTAATGAAT 50.9% identity Open · Scan
MA0898.1 NN 70-40% JASPAR ACAAGCAATTAAAGAAT 50.9% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 50.8% identity Open · Scan
M03775_2.00 NN 70-40% CisBP GTTTTATGTGTTTT 50.7% identity Open · Scan
MA0908.1 NN 70-40% JASPAR GTCGTAAAAA 50.7% identity Open · Scan
M02081_2.00 NN 70-40% CisBP TTTTATTA 50.0% identity Open · Scan
M02220_2.00 NN 70-40% CisBP CAATCATTGG 50.0% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 50.0% identity Open · Scan
M06912_2.00 NN 70-40% CisBP TCAATAATTGA 50.0% identity Open · Scan
MA0722.1 NN 70-40% JASPAR CTAATTAC 50.0% identity Open · Scan
MA1530.1 NN 70-40% JASPAR CTCATTAAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 144 aa
19-74

Region 19-74 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
5ZJS
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 19-741 model
Actions
Predicted = Low DIMER_A0A0M3L9V7:19:74_5zjs_A_1 5zjs 19-74 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
19-74PF00046Homeodomainoverlaps 19-74