Region 195-253 0 PWM
- Residues
- 59 aa
- Domains
- PF00046 · Homeodomain
- 3D models
- 1 active PDB
- Templates
- 1FJL
- Sources
- Structure model
Transcription factor
A0A0S2Z439 - LMX1B
LIM homeobox transcription factor 1-beta (LIM/homeobox protein 1.2) (LIM/homeobox protein LMX1B)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 372 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known1
| Motif | Prediction | Source | DNA binding | Support | Logo | Actions |
|---|---|---|---|---|---|---|
| M03153_2.00 | Known | CisBP | TTAATTAA | Direct PWM | Open · Scan |
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
372 aa
195-253
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 195-2531 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_A0A0S2Z439:195:253_1fjl_A_1 | 1fjl | 195-253 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 33-88 | PF00412 | LIM domain | No overlap with loaded model regions |
| 92-149 | PF00412 | LIM domain | No overlap with loaded model regions |
| 197-253 | PF00046 | Homeodomain | overlaps 195-253 |