ModCRE DB

Transcription factor

A0A0S2Z4K5 - PPARG

Peroxisome proliferator-activated receptor gamma (PPAR-gamma) (Nuclear receptor subfamily 1 group C member 3)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 260 aa

104 Generated PWM 39 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)82
MotifPredictionSourceDNA bindingSupportLogoActions
M02392_2.00 NN 70-40% CisBP GAGGTCAA 66.1% identity Open · Scan
M09275_2.00 NN 70-40% CisBP GGGTCACTTCAGGTCAG 65.0% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 63.6% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 63.5% identity Open · Scan
M03424_2.00 NN 70-40% CisBP AAAGGTCACCAGAGGTCA 63.1% identity Open · Scan
M05563_2.00 NN 70-40% CisBP AAAAGGTCAA 63.1% identity Open · Scan
MA0857.1 NN 70-40% JASPAR AAAGGTCAAAAGGTCA 63.1% identity Open · Scan
MA1552.1 NN 70-40% JASPAR AAGGTCATGACCTT 63.1% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 62.1% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 62.1% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 62.1% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 62.1% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 62.1% identity Open · Scan
M03432_2.00 NN 70-40% CisBP AAAGGTCAAGAGAGGTCA 61.8% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 61.8% identity Open · Scan
MA0159.1 NN 70-40% JASPAR AGGTCACGGAGAGGTCA 61.8% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 61.8% identity Open · Scan
M02400_2.00 NN 70-40% CisBP GGGGTCAC 61.1% identity Open · Scan
M09277_2.00 NN 70-40% CisBP GGGGGATCAAGAGGTCAAGG 61.1% identity Open · Scan
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 61.1% identity Open · Scan
MA0859.1 NN 70-40% JASPAR AAGGTCAAAAGGTCAA 60.5% identity Open · Scan
MA1553.1 NN 70-40% JASPAR AAGGTCATGACCTT 60.5% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 60.2% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 60.2% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 59.4% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 59.4% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 59.4% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 59.2% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 59.0% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 59.0% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 59.0% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 59.0% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 59.0% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 58.3% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 58.3% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 58.3% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 58.2% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 58.2% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 58.2% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 57.6% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 57.5% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 57.5% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 57.3% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 57.3% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 56.0% identity Open · Scan
M00689_2.00 NN 70-40% CisBP AAAGATCAA 55.8% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 55.7% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 55.7% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 55.7% identity Open · Scan
M03392_2.00 NN 70-40% CisBP AAGGTCAACTAAAGGTCA 55.3% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 55.2% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 55.2% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 55.2% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 55.2% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 55.1% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 55.0% identity Open · Scan
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 54.7% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 54.7% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 54.6% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 54.6% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 54.5% identity Open · Scan
M02411_2.00 NN 70-40% CisBP AGGACATC 54.2% identity Open · Scan
MA0592.1 NN 70-40% JASPAR CCAAGGTCACA 54.1% identity Open · Scan
MA0592.2 NN 70-40% JASPAR TTCAAGGTCAT 54.1% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 53.5% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 53.0% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 53.0% identity Open · Scan
M09283_2.00 NN 70-40% CisBP TGAGGTCAAAAAAGTTCAG 52.9% identity Open · Scan
MA1533.1 NN 70-40% JASPAR ATGAACTCGATGAACTC 52.9% identity Open · Scan
M02409_2.00 NN 70-40% CisBP GAGATCAA 52.7% identity Open · Scan
M06432_2.00 NN 70-40% CisBP AAAAATCAAAGGT 52.7% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 52.2% identity Open · Scan
M03930_2.00 NN 70-40% CisBP AACTAGAGCAC 52.0% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 51.7% identity Open · Scan
M03928_2.00 NN 70-40% CisBP ATGTAGGTCAAG 51.7% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 51.5% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 51.5% identity Open · Scan
MA0074.1 NN 70-40% JASPAR GGGTCAACGAGTTCA 50.7% identity Open · Scan
MA0693.1 NN 70-40% JASPAR GAGTTCATTGAGTTCA 50.7% identity Open · Scan
MA1534.1 NN 70-40% JASPAR ATGAACTTT 50.7% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 50.0% identity Open · Scan
MA0727.1 NN 70-40% JASPAR GGGAACACAATGTTCCC 50.0% identity Open · Scan
ModCRE22
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_1a6y_B_1 ModCRE Homology model TTCAGAGGTCAAAAGGTCAT Region 107-170 · 1 3D model Open · Scan
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_1hlz_B_1 ModCRE Homology model CTAAAAGGTCAAAAGGTCAT Region 107-170 · 1 3D model Open · Scan
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1a6y_B_1 ModCRE Homology model TTCAAAGGTCAATAAGTCAA Region 107-178 · 1 3D model Open · Scan
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1hlz_B_1 ModCRE Homology model CTCAAAGGTCAAAAGGTCAT Region 107-178 · 1 3D model Open · Scan
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:111:170_1ga5_B_1 ModCRE Homology model CTAAAAGGTCAATTGGTCAT Region 111-170 · 1 3D model Open · Scan
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:111:170_1r0o_A_1 ModCRE Homology model AAAGGTCAATGACCTTG Region 111-170 · 1 3D model Open · Scan
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:111:170_2han_A_1 ModCRE Homology model AAAAGGTCAATGACCTTTG Region 111-170 · 1 3D model Open · Scan
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzu_D_1 ModCRE Homology model CACCAGAGGTCTC Region 171-260 · 1 3D model Open · Scan
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzy_D_1 ModCRE Homology model AACAAAGAGTCTC Region 171-260 · 1 3D model Open · Scan
DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3e00_D_1 ModCRE Homology model CGTCACTGGTCTC Region 171-260 · 1 3D model Open · Scan
TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_1a6y_B_1 ModCRE Homology model TTCAGAGGTCAAAAGGTCAT Region 107-170 · 1 3D model Open · Scan
TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_1hlz_B_1 ModCRE Homology model ACAAAAGGTCAATAGGTCAT Region 107-170 · 1 3D model Open · Scan
TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_3e00_D_1 ModCRE Homology model CCAACTAGGTCAAAGGGAC Region 107-170 · 1 3D model Open · Scan
TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:108:170_3dzu_D_1 ModCRE Homology model CCTACTAGGTCAAAGGGAG Region 108-170 · 1 3D model Open · Scan
TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:108:170_3dzy_D_1 ModCRE Homology model TTAACTAGGTCAAAGGGAG Region 108-170 · 1 3D model Open · Scan
TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:111:178_1ga5_B_1 ModCRE Homology model CTCAAAGGTCAAAAGGTCAT Region 111-178 · 1 3D model Open · Scan
a0a0s2z4k5.af3.0 ModCRE AlphaFold3 model ACCCTCAAAGGTCAATTTTTA AlphaFold3 model · ModCRE PWM Open · Scan
a0a0s2z4k5.af3.1 ModCRE AlphaFold3 model TCCTTAAAAGGTCAATTTATT AlphaFold3 model · ModCRE PWM Open · Scan
a0a0s2z4k5.af3.2 ModCRE AlphaFold3 model ACTCTCAAAGGTCAATTTTTT AlphaFold3 model · ModCRE PWM Open · Scan
a0a0s2z4k5.af3.3 ModCRE AlphaFold3 model GTTCCCAAAGGTCAAATTTAC AlphaFold3 model · ModCRE PWM Open · Scan
a0a0s2z4k5.af3.4 ModCRE AlphaFold3 model GCCCTCAAAGGTCAATTTTAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a0s2z4k5.af3.5 ModCRE AlphaFold3 model CATCTAAAAGGTCAATTTAAG AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 260 aa
107-260

Region 107-260 16 PWM

Residues
154 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
21 active PDBs · 10 summary rows
Templates
1A6Y, 1GA5, 1HLZ, 1R0O, 2HAN, 3DZU, 3DZY, 3E00
Sources
Predicted = Low
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
39 active PDB models 10 summary rows
Region 107-26021 models · 10 summary rows
Actions
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_1a6y_B_1 1a6y 107-170 View model · PDB
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_1hlz_B_1 1hlz 107-170 View model · PDB
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1a6y_B_1 1a6y 107-178 View model · PDB
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1hlz_B_1 1hlz 107-178 View model · PDB
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:111:170_1ga5_B_1 1ga5 111-170 View model · PDB
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:111:170_1r0o_A_1 1r0o 111-170 View model · PDB
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:111:170_2han_A_1 2han 111-170 View model · PDB
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzu_D_1 3dzu 171-260 View model · PDB
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzy_D_1 3dzy 171-260 View model · PDB
Predicted = Low DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3e00_D_1 3e00 171-260 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_1a6y_B_1 1a6y 107-170 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_1hlz_B_1 1hlz 107-170 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:170_3e00_D_1 3e00 107-170 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1a6y_B_1 1a6y 107-178 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1hlz_B_1 1hlz 107-178 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:108:170_3dzu_D_1 3dzu 108-170 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:108:170_3dzy_D_1 3dzy 108-170 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:111:178_1ga5_B_1 1ga5 111-178 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzu_D_1 3dzu 171-260 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzy_D_1 3dzy 171-260 View model · PDB
Predicted = Low TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3e00_D_1 3e00 171-260 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 3e00 171:260 111,171 175,260 P:A,D · DNA:C,F 93.3% / 95.6% 22,24 View · PDB DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3e00_D_1
1 3e00 171:260 111,171 175,260 P:A,D · DNA:C,F 93.3% / 95.6% 22,24 View · PDB TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3e00_D_1
2 3dzy 171:260 111,171 175,260 P:A,D · DNA:C,F 93.3% / 95.6% 21,25 View · PDB DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzy_D_1
2 3dzy 171:260 111,171 175,260 P:A,D · DNA:C,F 93.3% / 95.6% 21,25 View · PDB TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzy_D_1
3 3dzu 171:260 111,171 175,260 P:A,D · DNA:C,F 93.3% / 95.6% 22,25 View · PDB DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzu_D_1
3 3dzu 171:260 111,171 175,260 P:A,D · DNA:C,F 93.3% / 95.6% 22,25 View · PDB TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:171:260_3dzu_D_1
4 1hlz 171:260 111,107 178,178 P:A,B · DNA:C,D 62.2% / 78.4% 83,88 View · PDB DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1hlz_B_1
4 1hlz 171:260 111,107 178,178 P:A,B · DNA:C,D 62.2% / 78.4% 83,88 View · PDB TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1hlz_B_1
5 1a6y 171:260 111,107 178,178 P:A,B · DNA:C,D 62.2% / 78.4% 87,85 View · PDB DIMER_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1a6y_B_1
5 1a6y 171:260 111,107 178,178 P:A,B · DNA:C,D 62.2% / 78.4% 87,85 View · PDB TFS_tr_A0A0S2Z4K5_A0A0S2Z4K5_HUMAN:107:178_1a6y_B_1
Full sequence / unlocalized models18 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a0s2z4k5.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_dimer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_dimer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_dimer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_dimer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_dimer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_dimer.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_monomer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_monomer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_monomer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_monomer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_monomer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a0s2z4k5_monomer.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
3-80PF12577PPAR gamma N-terminal regionNo overlap with loaded model regions
110-176PF00105Double treble clef zinc finger, C4 typeoverlaps 107-260