ModCRE DB

Transcription factor

A0A0S2Z4M5 - RXRB

Retinoid X receptor beta isoform 3

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 508 aa

33 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)6
MotifPredictionSourceDNA bindingSupportLogoActions
MA0855.1 NN 70+% JASPAR GGGGTCAAAGGTCA 95.3% identity Open · Scan
M03435_2.00 NN 70+% CisBP GGGGTCAAAGGTCA 89.3% identity Open · Scan
M02400_2.00 NN 70+% CisBP GGGGTCAC 74.1% identity Open · Scan
MA0065.1 NN 70+% JASPAR CCAGGGGTCAAAGGTCATCG 72.0% identity Open · Scan
M03421_2.00 NN 70+% CisBP GGGGTCAAAGGTCA 71.9% identity Open · Scan
MA0065.2 NN 70+% JASPAR GTAGGGCAAAGGTCA 71.9% identity Open · Scan
Nearest Neighbor (70% - 40%)27
MotifPredictionSourceDNA bindingSupportLogoActions
MA0856.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 67.3% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 65.7% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 65.7% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 65.7% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 63.4% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 63.3% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 61.9% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 61.9% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 61.9% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 61.9% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 60.5% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 60.5% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 60.5% identity Open · Scan
M01298_2.00 NN 70-40% CisBP AAAGGTCA 60.2% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 57.6% identity Open · Scan
M09609_2.00 NN 70-40% CisBP CCAGGAACAG 56.6% identity Open · Scan
MA1148.1 NN 70-40% JASPAR ATGTAGGTCAAAGGTCAT 56.3% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 55.5% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 54.7% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 54.7% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 54.7% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 54.5% identity Open · Scan
M08226_2.00 NN 70-40% CisBP CAAGGTCA 54.4% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 54.3% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 54.1% identity Open · Scan
M06431_2.00 NN 70-40% CisBP AAAAGTCAAA 53.4% identity Open · Scan
M00686_2.00 NN 70-40% CisBP AGTGATCA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 508 aa
202-278

Region 202-278 0 PWM

Residues
77 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
6FBR
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 202-2781 model
Actions
Predicted = Low DIMER_A0A0S2Z4M5:202:278_6fbr_A_1 6fbr 202-278 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
204-272PF00105Double treble clef zinc finger, C4 typeoverlaps 202-278
336-380PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions
391-487PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions