ModCRE DB

Transcription factor

A0A0S2Z4P2 - PAX8

Paired box protein Pax-8

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 384 aa

17 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)11
MotifPredictionSourceDNA bindingSupportLogoActions
MA0781.1 NN 70+% JASPAR CGTCACGCATGACTGCA 77.7% identity Open · Scan
M05685_2.00 NN 70+% CisBP GGCGCAGTCATGCGTGACGG 77.1% identity Open · Scan
M03945_2.00 NN 70+% CisBP GTCATGCGTGACG 76.3% identity Open · Scan
MA0779.1 NN 70+% JASPAR CGTCACGCATGACTGCA 76.3% identity Open · Scan
M00354_2.00 NN 70+% CisBP CCGATTA 71.4% identity Open · Scan
M03888_2.00 NN 70+% CisBP GCGTGACGAATC 71.4% identity Open · Scan
M05419_2.00 NN 70+% CisBP CGATTAGTCACGGTT 71.4% identity Open · Scan
MA0680.1 NN 70+% JASPAR TAATCGATTA 71.4% identity Open · Scan
MA0780.1 NN 70+% JASPAR TAATCGATTA 71.4% identity Open · Scan
MA0068.1 NN 70+% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 70.4% identity Open · Scan
MA0068.2 NN 70+% JASPAR CTAATTAG 70.4% identity Open · Scan
Nearest Neighbor (70% - 40%)6
MotifPredictionSourceDNA bindingSupportLogoActions
M03947_2.00 NN 70-40% CisBP AGCGTGACGGTTCCGCT 68.4% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 67.7% identity Open · Scan
M02426_2.00 NN 70-40% CisBP ACCGTGACCAC 65.6% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 64.7% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 64.6% identity Open · Scan
M10806_2.00 NN 70-40% CisBP AATTTTCACGCATGAGTTCAC 53.6% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 384 aa
162-183

Region 162-183 0 PWM

Residues
22 aa
Domains
No overlapping PFAM annotation recorded
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 162-1831 model
Actions
Predicted = Low DIMER_A0A0S2Z4P2:162:183_1fjl_B_1 1fjl 162-183 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
9-73PF00292'Paired box' domainNo overlap with loaded model regions
273-383PF12403Paired-box protein 2 C terminalNo overlap with loaded model regions