ModCRE DB

Transcription factor

A0A1B0GTU5 - ARID1A

AT-rich interaction domain 1A

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1903 aa

8 Generated PWM 8 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A1B0GTU5_A0A1B0GTU5_HUMAN:625:746_1kqq_A_1 ModCRE Homology model ATGATAAAATAA Region 625-746 · 1 3D model Open · Scan
TFS_tr_A0A1B0GTU5_A0A1B0GTU5_HUMAN:649:733_2oeh_A_1 ModCRE Homology model TTTAAGCGATGAA Region 649-733 · 1 3D model Open · Scan
a0a1b0gtu5.af3.0 ModCRE AlphaFold3 model GCCTTTTGGCGCCCGGC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gtu5.af3.1 ModCRE AlphaFold3 model TTCCTACCGAGAGAGCCCAATGTTTTGCAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gtu5.af3.2 ModCRE AlphaFold3 model CCAAAAGCCGGCCGCGCACACGTTC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gtu5.af3.3 ModCRE AlphaFold3 model GCCTTTTGGCGCCCGGC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gtu5.af3.4 ModCRE AlphaFold3 model CCGTACAAATTTTATTTGCGCTCCCCA AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gtu5.af3.5 ModCRE AlphaFold3 model TAAAAATCCGCGCCGCCC AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1903 aa
625-746

Region 625-746 2 PWM

Residues
122 aa
Domains
PF01388 · ARID/BRIGHT DNA binding domain
3D models
2 active PDBs · 2 summary rows
Templates
1KQQ, 2OEH
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models 2 summary rows
Region 625-7462 models · 2 summary rows
Actions
Predicted = Low TFS_tr_A0A1B0GTU5_A0A1B0GTU5_HUMAN:625:746_1kqq_A_1 1kqq 625-746 View model · PDB
Predicted = Low TFS_tr_A0A1B0GTU5_A0A1B0GTU5_HUMAN:649:733_2oeh_A_1 2oeh 649-733 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1kqq 625:746 625 746 P:A · DNA:B,C 32.5% / 60.2% 92 View · PDB TFS_tr_A0A1B0GTU5_A0A1B0GTU5_HUMAN:625:746_1kqq_A_1
2 2oeh 625:746 649 733 P:A · DNA:B,C 22.1% / 54.7% 79 View · PDB TFS_tr_A0A1B0GTU5_A0A1B0GTU5_HUMAN:649:733_2oeh_A_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a1b0gtu5.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gtu5.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gtu5.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gtu5.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gtu5.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gtu5.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
639-723PF01388ARID/BRIGHT DNA binding domainoverlaps 625-746
1594-1849PF12031SWI/SNF-like complex subunit BAF250/OsaNo overlap with loaded model regions