ModCRE DB

Transcription factor

A0A1B0GUB4 - SNAPC4

snRNA-activating protein complex subunit 4

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 451 aa

15 Generated PWM 23 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)4
MotifPredictionSourceDNA bindingSupportLogoActions
M01286_2.00 NN 70-40% CisBP TACCTACC 55.5% identity Open · Scan
M07021_2.00 NN 70-40% CisBP ATTAGTTCACCTACC 55.5% identity Open · Scan
M07123_2.00 NN 70-40% CisBP TTTACCTAAC 55.1% identity Open · Scan
M07026_2.00 NN 70-40% CisBP ATAACTGACTT 50.0% identity Open · Scan
ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:144:451_7xur_A_1 ModCRE Homology model AATGGGTAAAAACCGTTGTAAAT Region 144-451 · 1 3D model Open · Scan
TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:149:451_8iue_4_1 ModCRE Homology model GCCGTTTCG Region 149-451 · 1 3D model Open · Scan
TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:149:451_8iuh_4_1 ModCRE Homology model GTTTCG Region 149-451 · 1 3D model Open · Scan
TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:81:398_7zwc_c_1 ModCRE Homology model ACTTCTTTAAAGGGGGGCCATCCGGTT Region 81-398 · 1 3D model Open · Scan
TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:81:398_7zxe_c_1 ModCRE Homology model TCCCCAACCCCCGGGGGATCAAAATTT Region 81-398 · 1 3D model Open · Scan
a0a1b0gub4.af3.0 ModCRE AlphaFold3 model GCTTAAAAAACGTGTTTTCCGGGGGA AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gub4.af3.1 ModCRE AlphaFold3 model CTTCGTTGGAAAACGGTTTAAAAGGC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gub4.af3.2 ModCRE AlphaFold3 model CGCCTTCCTTTTTTTAAAAAT AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gub4.af3.3 ModCRE AlphaFold3 model GCTTAAAAAACGTGTTTTCCGGGGGA AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gub4.af3.4 ModCRE AlphaFold3 model CAGAAGGAAAAAGC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gub4.af3.5 ModCRE AlphaFold3 model AAAAAACGGTTTTTAGAAAATTCCCCA AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 451 aa
81-451

Region 81-451 5 PWM

Residues
371 aa
Domains
PF13921 · Myb-like DNA-binding domain PF00249 · Myb-like DNA-binding domain
3D models
5 active PDBs · 5 summary rows
Templates
7XUR, 7ZWC, 7ZXE, 8IUE, 8IUH
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
23 active PDB models 5 summary rows
Region 81-4515 models · 5 summary rows
Actions
Predicted = Low TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:144:451_7xur_A_1 7xur 144-451 View model · PDB
Predicted = Low TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:149:451_8iue_4_1 8iue 149-451 View model · PDB
Predicted = Low TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:149:451_8iuh_4_1 8iuh 149-451 View model · PDB
Predicted = Low TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:81:398_7zwc_c_1 7zwc 81-398 View model · PDB
Predicted = Low TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:81:398_7zxe_c_1 7zxe 81-398 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 8iuh 81:451 149 451 P:4 · DNA:X,Y 100.0% / 100.0% 83 View · PDB TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:149:451_8iuh_4_1
2 8iue 81:451 149 451 P:4 · DNA:X,Y 100.0% / 100.0% 83 View · PDB TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:149:451_8iue_4_1
3 7zxe 81:451 81 398 P:c · DNA:N,T 95.3% / 95.3% 100 View · PDB TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:81:398_7zxe_c_1
4 7zwc 81:451 81 398 P:c · DNA:N,T 95.3% / 95.3% 100 View · PDB TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:81:398_7zwc_c_1
5 7xur 81:451 144 451 P:A · DNA:X,Y 83.1% / 83.1% 83 View · PDB TFS_tr_A0A1B0GUB4_A0A1B0GUB4_HUMAN:144:451_7xur_A_1
Full sequence / unlocalized models18 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a1b0gub4.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_dimer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_dimer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_dimer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_dimer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_dimer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_dimer.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_monomer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_monomer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_monomer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_monomer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_monomer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gub4_monomer.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
297-357PF13921Myb-like DNA-binding domainoverlaps 81-451
401-445PF00249Myb-like DNA-binding domainoverlaps 81-451