ModCRE DB

Transcription factor

A0A1B0GVK1 - ARID1B

AT-rich interaction domain 1B

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1539 aa

8 Generated PWM 8 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A1B0GVK1_A0A1B0GVK1_HUMAN:345:445_1kqq_A_1 ModCRE Homology model TATTTTTGTTATT Region 345-445 · 1 3D model Open · Scan
TFS_tr_A0A1B0GVK1_A0A1B0GVK1_HUMAN:369:454_2oeh_A_1 ModCRE Homology model AAGTACGAAACAA Region 369-454 · 1 3D model Open · Scan
a0a1b0gvk1.af3.0 ModCRE AlphaFold3 model CCCGGGGCCGGTACCCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gvk1.af3.1 ModCRE AlphaFold3 model CCCGTCGCCGGTACCCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gvk1.af3.2 ModCRE AlphaFold3 model AAACACCG AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gvk1.af3.3 ModCRE AlphaFold3 model GCGGCAAACGCAAAAAAACCAAAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gvk1.af3.4 ModCRE AlphaFold3 model CTTCCCCGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a1b0gvk1.af3.5 ModCRE AlphaFold3 model GCGCGGAACGGCGAGA AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1539 aa
345-454

Region 345-454 2 PWM

Residues
110 aa
Domains
PF01388 · ARID/BRIGHT DNA binding domain
3D models
2 active PDBs · 2 summary rows
Templates
1KQQ, 2OEH
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models 2 summary rows
Region 345-4542 models · 2 summary rows
Actions
Predicted = Low TFS_tr_A0A1B0GVK1_A0A1B0GVK1_HUMAN:345:445_1kqq_A_1 1kqq 345-445 View model · PDB
Predicted = Low TFS_tr_A0A1B0GVK1_A0A1B0GVK1_HUMAN:369:454_2oeh_A_1 2oeh 369-454 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1kqq 345:454 345 445 P:A · DNA:B,C 38.2% / 69.6% 77 View · PDB TFS_tr_A0A1B0GVK1_A0A1B0GVK1_HUMAN:345:445_1kqq_A_1
2 2oeh 345:454 369 454 P:A · DNA:B,C 22.1% / 55.8% 80 View · PDB TFS_tr_A0A1B0GVK1_A0A1B0GVK1_HUMAN:369:454_2oeh_A_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a1b0gvk1.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gvk1.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gvk1.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gvk1.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gvk1.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1b0gvk1.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
359-443PF01388ARID/BRIGHT DNA binding domainoverlaps 345-454
1230-1485PF12031SWI/SNF-like complex subunit BAF250/OsaNo overlap with loaded model regions