Region 37-327 0 PWM
- Residues
- 291 aa
- Domains
- PF00554 · Rel homology DNA-binding domain PF16179 · Rel homology dimerisation domain
- 3D models
- 1 active PDB
- Templates
- 1A3Q
- Sources
- Structure model
Transcription factor
A0A1P8C958 - NFKB2
Nuclear factor NF-kappa-B p100 subunit (DNA-binding factor KBF2) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2)
Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 854 aa
Motif Prediction
Only entries with a generated matrix are shown here.
Known1
Nearest Neighbor (>70%)0
No generated PWM in this category.
Nearest Neighbor (70% - 40%)0
No generated PWM in this category.
ModCRE0
No generated PWM in this category.
Model-supported DNA-binding regions
Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.
1
854 aa
37-327
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
Region 37-3271 model
| Actions | ||||
|---|---|---|---|---|
| Predicted = Low | DIMER_A0A1P8C958:37:327_1a3q_B_1 | 1a3q | 37-327 | View model · PDB |
View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.
Domains
Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.
| Residues | PFAM | Domain | Used by prediction region? |
|---|---|---|---|
| 40-220 | PF00554 | Rel homology DNA-binding domain | overlaps 37-327 |
| 229-327 | PF16179 | Rel homology dimerisation domain | overlaps 37-327 |
| 487-508 | PF00023 | Ankyrin repeat | No overlap with loaded model regions |
| 520-586 | PF12796 | Ankyrin repeats (3 copies) | No overlap with loaded model regions |
| 605-697 | PF12796 | Ankyrin repeats (3 copies) | No overlap with loaded model regions |
| 776-848 | PF00531 | Death domain | No overlap with loaded model regions |