ModCRE DB

Transcription factor

A0A1U9X8X7

UniProtKB entry deleted

60 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)48
MotifPredictionSourceDNA bindingSupportLogoActions
M00939_2.00 NN 70-40% CisBP CCACCTCA 62.3% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 62.3% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 61.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 61.1% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 60.7% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 60.4% identity Open · Scan
M08985_2.00 NN 70-40% CisBP TGAGGACCTACTGTGTGCC 60.2% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 60.0% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 59.6% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 59.5% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 59.5% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 59.5% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 58.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.4% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 58.0% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 57.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 57.3% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 57.1% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 57.1% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 55.3% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 55.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 54.7% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 54.5% identity Open · Scan
M07581_2.00 NN 70-40% CisBP TCCCCTGTGCTTCTCTCCCCT 54.4% identity Open · Scan
M07587_2.00 NN 70-40% CisBP CCCCCTCCCCAGTCGAGCCCCCGC 54.3% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 54.0% identity Open · Scan
M08245_2.00 NN 70-40% CisBP TGGTGCCTTATTCCC 54.0% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 53.7% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 53.3% identity Open · Scan
M07747_2.00 NN 70-40% CisBP TGGTCTATAAAGGGCCTGGTT 53.3% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 53.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 52.9% identity Open · Scan
M00945_2.00 NN 70-40% CisBP CACCGCAC 52.8% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 52.7% identity Open · Scan
M07605_2.00 NN 70-40% CisBP TATTTTTTTTTATTTTTTTTTTTTTTTTTT 52.4% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 52.4% identity Open · Scan
M07566_2.00 NN 70-40% CisBP TCAAACCATCCTTGC 52.2% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 52.1% identity Open · Scan
M07753_2.00 NN 70-40% CisBP TGCATTCCTTGGCTTGTG 51.7% identity Open · Scan
M07657_2.00 NN 70-40% CisBP CCCCTGCATGTCCCCATTTTT 51.5% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 51.0% identity Open · Scan
M08901_2.00 NN 70-40% CisBP CCAGTTCACACC 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M01474_2.00 NN 70-40% CisBP CGCCGATCAC 50.9% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 50.9% identity Open · Scan
M08392_2.00 NN 70-40% CisBP CTTCACCTGCTGAGG 50.3% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.1% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.0% identity Open · Scan
ModCRE12
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:385:436_1llm_D_1 ModCRE Homology model TTTGGTCCCAAA Region 385-436 · 1 3D model Open · Scan
TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:248:545_7w1m_H_1 ModCRE Homology model TCCGGGGGTGTAAGGCTTTCGCGGCCTCCGGGGGCAGTTTCTA Region 248-545 · 1 3D model Open · Scan
TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:272:550_5wjq_D_1 ModCRE Homology model CGCACGGGGGGGGGGCGGGGCAGGTCGG Region 272-550 · 1 3D model Open · Scan
TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:330:606_5v3j_E_1 ModCRE Homology model TTCCCGGGGGGGGGGGGCTCGGGGGG Region 330-606 · 1 3D model Open · Scan
TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:330:606_5v3m_C_1 ModCRE Homology model TTTTTGCGGAAGGGTGGGGTGGGGAA Region 330-606 · 1 3D model Open · Scan
TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:424:577_2i13_A_1 ModCRE Homology model GCTTGCAGGCTACAGCGTCAG Region 424-577 · 1 3D model Open · Scan
a0a1u9x8x7.af3.0 ModCRE AlphaFold3 model GGTGGAGGGGAGGGGGGGGGGGGGTAGCGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a1u9x8x7.af3.1 ModCRE AlphaFold3 model CCCCTAACCCCCCCCCCCCCACTCTCCCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1u9x8x7.af3.2 ModCRE AlphaFold3 model CCCCTACGCCCCCCCCCCCCACCCTCCAGC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1u9x8x7.af3.3 ModCRE AlphaFold3 model CACCGACCCCCCCCCCCCCCACTCTCCAGC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1u9x8x7.af3.4 ModCRE AlphaFold3 model CCCCTACCCCCCCCCCCCCGACCCTCCACC AlphaFold3 model · ModCRE PWM Open · Scan
a0a1u9x8x7.af3.5 ModCRE AlphaFold3 model GGTGGAGGGGAGGGGGGGGGGGGGTAGCGG AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

Region 248-606 6 PWM

Residues
359 aa
Domains
No overlapping PFAM annotation recorded
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 248-6066 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:385:436_1llm_D_1 1llm 385-436 View model · PDB
Predicted = Low TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:248:545_7w1m_H_1 7w1m 248-545 View model · PDB
Predicted = Low TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:272:550_5wjq_D_1 5wjq 272-550 View model · PDB
Predicted = Low TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:330:606_5v3j_E_1 5v3j 330-606 View model · PDB
Predicted = Low TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:330:606_5v3m_C_1 5v3m 330-606 View model · PDB
Predicted = Low TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:424:577_2i13_A_1 2i13 424-577 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 245:634 424 577 P:A · DNA:C,D 56.5% / 68.2% 100 View · PDB TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:424:577_2i13_A_1
1 5wjq 245:634 272 550 P:D · DNA:A,B 50.5% / 69.9% 99 View · PDB TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:272:550_5wjq_D_1
1 1llm 245:634 385,385 436,436 P:C,D · DNA:A,B 50.0% / 67.3% 59,61 View · PDB DIMER_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:385:436_1llm_D_1
2 5v3m 245:634 330 606 P:C · DNA:A,B 49.5% / 67.9% 100 View · PDB TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:330:606_5v3m_C_1
3 5v3j 245:634 330 606 P:E · DNA:A,B 49.5% / 67.9% 100 View · PDB TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:330:606_5v3j_E_1
5 7w1m 245:634 248 545 P:H · DNA:F,G 35.8% / 52.1% 92 View · PDB TFS_tr_A0A1U9X8X7_A0A1U9X8X7_HUMAN:248:545_7w1m_H_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a1u9x8x7.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1u9x8x7.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1u9x8x7.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1u9x8x7.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1u9x8x7.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a1u9x8x7.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Imported domain tags12
BolAC1_1C1_4CxxC_CxxC_SSSSDZRKRABXPA_Nzf-C2H2zf-C2H2_4zf-C2H2_6zf-C2H2_jazzf-H2C2_2