Transcription factor

A0A1W2PPM1 - CPHXL

Cytoplasmic polyadenylated homeobox-like protein (Cytoplasmic polyadenylated homeobox 1)

Homo sapiens (Human) · Reviewed (UniProtKB/Swiss-Prot) · 405 aa

21 Generated PWM 33 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE21

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:26:82_5zjq_B_1	ModCRE	Homology model	TCCATTAATTAAAA	Region 26-82 · 1 3D model		Open · Scan
DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:26:82_5zjr_B_1	ModCRE	Homology model	TCAATAAATAAAAA	Region 26-82 · 1 3D model		Open · Scan
DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:27:82_1b72_B_1	ModCRE	Homology model	GCGGTCATACATTTAAAAC	Region 27-82 · 1 3D model		Open · Scan
DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3a01_B_1	ModCRE	Homology model	AATCTATTAATTAGCCG	Region 30-82 · 1 3D model		Open · Scan
DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:30:83_1fjl_B_1	ModCRE	Homology model	AAAATTCCATCTG	Region 30-83 · 1 3D model		Open · Scan
DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:32:83_3hdd_A_1	ModCRE	Homology model	CCCGCAAAATTGGGGAA	Region 32-83 · 1 3D model		Open · Scan
TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_2lkx_A_1	ModCRE	Homology model	CCAGTACTTGACC	Region 30-82 · 1 3D model		Open · Scan
TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3a01_B_1	ModCRE	Homology model	AATCTATTAATTAGCCG	Region 30-82 · 1 3D model		Open · Scan
TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3cmy_A_1	ModCRE	Homology model	GAAATGA	Region 30-82 · 1 3D model		Open · Scan
TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3lnq_A_1	ModCRE	Homology model	CCCGATAATGACCC	Region 30-82 · 1 3D model		Open · Scan
TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:83_1fjl_B_1	ModCRE	Homology model	CAGATGGCATTAA	Region 30-83 · 1 3D model		Open · Scan
TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:32:83_1du0_B_1	ModCRE	Homology model	GGAAAATTATTATTTAA	Region 32-83 · 1 3D model		Open · Scan
TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:32:83_2hdd_B_1	ModCRE	Homology model	TTGGGAGCGAA	Region 32-83 · 1 3D model		Open · Scan
TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:34:82_2r5y_B_1	ModCRE	Homology model	CCTCATTGTTCCCCCGCT	Region 34-82 · 1 3D model		Open · Scan
TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:34:82_2r5z_B_1	ModCRE	Homology model	CCTCTAGATTCCCTCCT	Region 34-82 · 1 3D model		Open · Scan
a0a1w2ppm1.af3.0	ModCRE	AlphaFold3 model	CCCCATATGACATCTTTT	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a1w2ppm1.af3.1	ModCRE	AlphaFold3 model	CCCCTTATGACCCCGGTT	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a1w2ppm1.af3.2	ModCRE	AlphaFold3 model	CCCTTTATGACCCCGTTTTTTTA	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a1w2ppm1.af3.3	ModCRE	AlphaFold3 model	CCCCATATGACATCTTTT	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a1w2ppm1.af3.4	ModCRE	AlphaFold3 model	CCCCTTATTACAACTTTTA	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a1w2ppm1.af3.5	ModCRE	AlphaFold3 model	CCCCTTATGACATCTTTA	AlphaFold3 model · ModCRE PWM		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 405 aa

17-88

Region 17-88 15 PWM

Residues

72 aa

Domains

PF00046 · Homeodomain

3D models

15 active PDBs · 10 summary rows

Templates

1B72, 1DU0, 1FJL, 2HDD, 2LKX, 2R5Y, 2R5Z, 3A01, ...

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

33 active PDB models 10 summary rows

Region 17-8815 models · 10 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:26:82_5zjq_B_1	5zjq	26-82	View model · PDB
Predicted = Low	DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:26:82_5zjr_B_1	5zjr	26-82	View model · PDB
Predicted = Low	DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:27:82_1b72_B_1	1b72	27-82	View model · PDB
Predicted = Low	DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3a01_B_1	3a01	30-82	View model · PDB
Predicted = Low	DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:30:83_1fjl_B_1	1fjl	30-83	View model · PDB
Predicted = Low	DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:32:83_3hdd_A_1	3hdd	32-83	View model · PDB
Predicted = Low	TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_2lkx_A_1	2lkx	30-82	View model · PDB
Predicted = Low	TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3a01_B_1	3a01	30-82	View model · PDB
Predicted = Low	TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3cmy_A_1	3cmy	30-82	View model · PDB
Predicted = Low	TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3lnq_A_1	3lnq	30-82	View model · PDB
Predicted = Low	TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:83_1fjl_B_1	1fjl	30-83	View model · PDB
Predicted = Low	TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:32:83_1du0_B_1	1du0	32-83	View model · PDB
Predicted = Low	TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:32:83_2hdd_B_1	2hdd	32-83	View model · PDB
Predicted = Low	TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:34:82_2r5y_B_1	2r5y	34-82	View model · PDB
Predicted = Low	TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:34:82_2r5z_B_1	2r5z	34-82	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
2	1fjl	26:91	27,30	83,83	P:A,B · DNA:D,E	42.6% / 53.7%	87,94	View · PDB DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:30:83_1fjl_B_1
4	1fjl	26:91	27,30	83,83	P:A,B · DNA:D,E	42.6% / 53.7%	87,94	View · PDB TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:83_1fjl_B_1
5	3hdd	26:91	32,32	83,83	P:A,B · DNA:C,D	40.4% / 50.0%	94,92	View · PDB DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:32:83_3hdd_A_1
1	3a01	26:91	17,30	82,82	P:A,B · DNA:C,D	39.6% / 58.5%	83,92	View · PDB TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3a01_B_1
1	3a01	26:91	17,30	82,82	P:A,B · DNA:C,D	39.6% / 58.5%	83,92	View · PDB DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3a01_B_1
2	3lnq	26:91	30	82	P:A · DNA:B,C	39.6% / 58.5%	91	View · PDB TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3lnq_A_1
5	3cmy	26:91	30	82	P:A · DNA:B,C	37.7% / 52.8%	88	View · PDB TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_3cmy_A_1
3	2lkx	26:91	30	82	P:A · DNA:B,C	35.8% / 60.4%	77	View · PDB TFS_sp_A0A1W2PPM1_CPHXL_HUMAN:30:82_2lkx_A_1
3	1b72	26:91	32,27	88,82	P:A,B · DNA:D,E	35.7% / 51.8%	83,76	View · PDB DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:27:82_1b72_B_1
4	5zjq	26:91	30,26	82,82	P:A,B · DNA:C,D	35.1% / 50.9%	84,78	View · PDB DIMER_sp_A0A1W2PPM1_CPHXL_HUMAN:26:82_5zjq_B_1

Full sequence / unlocalized models18 models

Source	Model	Template	Residues modeled	Actions
Predicted = Low	a0a1w2ppm1.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1.af3.5	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_dimer.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_dimer.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_dimer.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_dimer.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_dimer.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_dimer.af3.5	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_monomer.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_monomer.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_monomer.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_monomer.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_monomer.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a1w2ppm1_monomer.af3.5	-	Full sequence / not localized	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
30-82	PF00046	Homeodomain	overlaps 17-88