ModCRE DB

Transcription factor

A0A1W2PQM7 - PAX6

Paired box protein Pax-6

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 386 aa

105 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)16
MotifPredictionSourceDNA bindingSupportLogoActions
MA0069.1 NN 70+% JASPAR TTCACGCATGAGTT 91.4% identity Open · Scan
M10806_2.00 NN 70+% CisBP AATTTTCACGCATGAGTTCAC 88.5% identity Open · Scan
M02425_2.00 NN 70+% CisBP CAGTCAAGCG 80.7% identity Open · Scan
M02690_2.00 NN 70+% CisBP AGTCACGC 80.7% identity Open · Scan
MA0067.1 NN 70+% JASPAR AGTCACGC 80.7% identity Open · Scan
M03294_2.00 NN 70+% CisBP CGTCACGCTTGACTGCTC 78.1% identity Open · Scan
M09622_2.00 NN 70+% CisBP GCAGCCAAGCGTGACC 77.9% identity Open · Scan
MA0014.2 NN 70+% JASPAR GAGGGCAGCCAAGCGTGAC 77.9% identity Open · Scan
M03945_2.00 NN 70+% CisBP GTCATGCGTGACG 77.5% identity Open · Scan
MA0014.1 NN 70+% JASPAR AGAGCACTGAAGCGTAACCG 77.0% identity Open · Scan
M02426_2.00 NN 70+% CisBP ACCGTGACCAC 73.8% identity Open · Scan
M05685_2.00 NN 70+% CisBP GGCGCAGTCATGCGTGACGG 73.5% identity Open · Scan
M03947_2.00 NN 70+% CisBP AGCGTGACGGTTCCGCT 72.0% identity Open · Scan
MA0779.1 NN 70+% JASPAR CGTCACGCATGACTGCA 71.2% identity Open · Scan
MA0781.1 NN 70+% JASPAR CGTCACGCATGACTGCA 71.2% identity Open · Scan
M03776_2.00 NN 70+% CisBP TAATTGAATTA 70.7% identity Open · Scan
Nearest Neighbor (70% - 40%)89
MotifPredictionSourceDNA bindingSupportLogoActions
MA1481.1 NN 70-40% JASPAR CTAATTAC 67.6% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 67.1% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 67.1% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 67.1% identity Open · Scan
M03278_2.00 NN 70-40% CisBP TTAATTTAATTAT 66.6% identity Open · Scan
M04917_2.00 NN 70-40% CisBP GTAATTAG 66.6% identity Open · Scan
MA0853.1 NN 70-40% JASPAR CGCATTAATTAATTACC 66.6% identity Open · Scan
M03076_2.00 NN 70-40% CisBP TTAATTAAATTAA 66.1% identity Open · Scan
MA0874.1 NN 70-40% JASPAR GTCCATTAATTAATGGA 66.1% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 66.0% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 65.0% identity Open · Scan
MA0662.1 NN 70-40% JASPAR TCTAATTAAC 64.9% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 64.6% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 64.6% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 64.3% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 64.1% identity Open · Scan
M00402_2.00 NN 70-40% CisBP TAATTAG 64.0% identity Open · Scan
M03121_2.00 NN 70-40% CisBP TTAATTGG 64.0% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 64.0% identity Open · Scan
MA0634.1 NN 70-40% JASPAR TCTAATTAAA 64.0% identity Open · Scan
MA0716.1 NN 70-40% JASPAR CTAATTAA 64.0% identity Open · Scan
M06322_2.00 NN 70-40% CisBP TTAATTA 63.6% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 63.4% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 63.4% identity Open · Scan
MA0654.1 NN 70-40% JASPAR CTAATTAA 63.3% identity Open · Scan
M04941_2.00 NN 70-40% CisBP CTAATTAC 63.2% identity Open · Scan
M06552_2.00 NN 70-40% CisBP TTAATTA 63.1% identity Open · Scan
M10741_2.00 NN 70-40% CisBP AACTAATTACCATTATCG 62.7% identity Open · Scan
MA0854.1 NN 70-40% JASPAR CGAATTAATTAATCACC 62.7% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 62.6% identity Open · Scan
MA0075.1 NN 70-40% JASPAR AATTA 62.5% identity Open · Scan
MA0075.3 NN 70-40% JASPAR CTAATTAA 62.5% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 62.2% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 62.2% identity Open · Scan
M02231_2.00 NN 70-40% CisBP TTAATTGG 61.9% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 61.4% identity Open · Scan
M06370_2.00 NN 70-40% CisBP TTAATTA 61.0% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 60.7% identity Open · Scan
MA0681.1 NN 70-40% JASPAR TAATTTAATTA 59.7% identity Open · Scan
MA0713.1 NN 70-40% JASPAR TAATTTAATTA 59.7% identity Open · Scan
M05245_2.00 NN 70-40% CisBP GTAATTAG 59.3% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 59.1% identity Open · Scan
M00424_2.00 NN 70-40% CisBP ACTAATTA 58.9% identity Open · Scan
M03851_2.00 NN 70-40% CisBP CTAATTGA 58.6% identity Open · Scan
M03855_2.00 NN 70-40% CisBP TAATTAGATTA 58.4% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 58.3% identity Open · Scan
M09569_2.00 NN 70-40% CisBP GTTAATCCCT 58.1% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 57.8% identity Open · Scan
MA0621.1 NN 70-40% JASPAR AATTAATTAGT 57.8% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 57.6% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 57.6% identity Open · Scan
M02082_2.00 NN 70-40% CisBP ATTGTACAAT 57.5% identity Open · Scan
M00674_2.00 NN 70-40% CisBP TTAATCCC 57.3% identity Open · Scan
M03876_2.00 NN 70-40% CisBP TAATTAAATTA 57.3% identity Open · Scan
M09681_2.00 NN 70-40% CisBP CTAATCCG 57.3% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 57.1% identity Open · Scan
M03204_2.00 NN 70-40% CisBP TTAATTGG 56.9% identity Open · Scan
M05367_2.00 NN 70-40% CisBP TTAATTAG 56.9% identity Open · Scan
MA0630.1 NN 70-40% JASPAR TTAATTGG 56.9% identity Open · Scan
MA0720.1 NN 70-40% JASPAR CTAATTAA 56.9% identity Open · Scan
M03250_2.00 NN 70-40% CisBP TTAATCCG 56.4% identity Open · Scan
M09153_2.00 NN 70-40% CisBP GTTAATCCCCT 56.4% identity Open · Scan
MA0711.1 NN 70-40% JASPAR TTAATCCG 56.4% identity Open · Scan
MA0712.1 NN 70-40% JASPAR TTAATCCT 56.4% identity Open · Scan
M06326_2.00 NN 70-40% CisBP TTAATT 56.2% identity Open · Scan
M09208_2.00 NN 70-40% CisBP CCTAATCCTCTTA 55.7% identity Open · Scan
MA0467.1 NN 70-40% JASPAR AAGAGGATTAG 55.7% identity Open · Scan
M00417_2.00 NN 70-40% CisBP GCTAATTA 55.3% identity Open · Scan
M02097_2.00 NN 70-40% CisBP AATTAATTAG 54.7% identity Open · Scan
M02195_2.00 NN 70-40% CisBP CCTAATCCGC 54.5% identity Open · Scan
MA0891.1 NN 70-40% JASPAR CCTAATCCGC 53.9% identity Open · Scan
M06310_2.00 NN 70-40% CisBP TTAATTA 53.7% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 53.7% identity Open · Scan
MA0894.1 NN 70-40% JASPAR GCTAATTGGC 53.4% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 52.5% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 52.5% identity Open · Scan
MA0887.1 NN 70-40% JASPAR GGTAATTAGC 52.5% identity Open · Scan
MA0888.1 NN 70-40% JASPAR GGTAATTAGC 52.5% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 52.3% identity Open · Scan
MA0714.1 NN 70-40% JASPAR CTTAATCCC 52.3% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 52.0% identity Open · Scan
M00679_2.00 NN 70-40% CisBP TTAATCCC 50.7% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 50.0% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 50.0% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 50.0% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 50.0% identity Open · Scan
MA0682.1 NN 70-40% JASPAR TTAATCCC 50.0% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 50.0% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 386 aa
173-232

Region 173-232 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 173-2321 model
Actions
Predicted = Low DIMER_A0A1W2PQM7:173:232_1fjl_A_1 1fjl 173-232 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-93PF00292'Paired box' domainNo overlap with loaded model regions
176-231PF00046Homeodomainoverlaps 173-232