ModCRE DB

Transcription factor

A0A1W2PQW3 - PAX6

Paired box 6

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 163 aa

26 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
M10806_2.00 NN 70+% CisBP AATTTTCACGCATGAGTTCAC 99.2% identity Open · Scan
MA0069.1 NN 70+% JASPAR TTCACGCATGAGTT 89.0% identity Open · Scan
Nearest Neighbor (70% - 40%)24
MotifPredictionSourceDNA bindingSupportLogoActions
M02425_2.00 NN 70-40% CisBP CAGTCAAGCG 69.9% identity Open · Scan
M02690_2.00 NN 70-40% CisBP AGTCACGC 69.9% identity Open · Scan
MA0067.1 NN 70-40% JASPAR AGTCACGC 69.9% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 68.9% identity Open · Scan
M03294_2.00 NN 70-40% CisBP CGTCACGCTTGACTGCTC 68.6% identity Open · Scan
M00349_2.00 NN 70-40% CisBP CTAATTAGC 68.4% identity Open · Scan
M09622_2.00 NN 70-40% CisBP GCAGCCAAGCGTGACC 68.3% identity Open · Scan
MA0014.2 NN 70-40% JASPAR GAGGGCAGCCAAGCGTGAC 68.3% identity Open · Scan
MA0014.1 NN 70-40% JASPAR AGAGCACTGAAGCGTAACCG 67.8% identity Open · Scan
M05685_2.00 NN 70-40% CisBP GGCGCAGTCATGCGTGACGG 65.6% identity Open · Scan
M03945_2.00 NN 70-40% CisBP GTCATGCGTGACG 65.3% identity Open · Scan
MA0068.2 NN 70-40% JASPAR CTAATTAG 62.5% identity Open · Scan
M05419_2.00 NN 70-40% CisBP CGATTAGTCACGGTT 62.4% identity Open · Scan
MA0680.1 NN 70-40% JASPAR TAATCGATTA 62.4% identity Open · Scan
MA0779.1 NN 70-40% JASPAR CGTCACGCATGACTGCA 62.0% identity Open · Scan
MA0781.1 NN 70-40% JASPAR CGTCACGCATGACTGCA 62.0% identity Open · Scan
M00354_2.00 NN 70-40% CisBP CCGATTA 61.0% identity Open · Scan
MA0068.1 NN 70-40% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 61.0% identity Open · Scan
MA0780.1 NN 70-40% JASPAR TAATCGATTA 61.0% identity Open · Scan
M02426_2.00 NN 70-40% CisBP ACCGTGACCAC 60.4% identity Open · Scan
M03947_2.00 NN 70-40% CisBP AGCGTGACGGTTCCGCT 57.7% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 57.6% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 56.2% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 55.3% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 163 aa
4-137

Region 4-137 0 PWM

Residues
134 aa
Domains
PF00292 · 'Paired box' domain
3D models
1 active PDB
Templates
6PAX
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 4-1371 model
Actions
Predicted = Low TFS_A0A1W2PQW3:4:137_6pax_A_1 6pax 4-137 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-137PF00292'Paired box' domainoverlaps 4-137