ModCRE DB

Transcription factor

A0A223ZRY6 - VDR

Vitamin D3 receptor (1,25-dihydroxyvitamin D3 receptor) (Nuclear receptor subfamily 1 group I member 1)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 424 aa

9 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)2
MotifPredictionSourceDNA bindingSupportLogoActions
MA0074.1 NN 70+% JASPAR GGGTCAACGAGTTCA 99.7% identity Open · Scan
MA0693.1 NN 70+% JASPAR GAGTTCATTGAGTTCA 87.7% identity Open · Scan
Nearest Neighbor (70% - 40%)7
MotifPredictionSourceDNA bindingSupportLogoActions
M03940_2.00 NN 70-40% CisBP TAAGTGCACGTGTACCCA 57.6% identity Open · Scan
M03930_2.00 NN 70-40% CisBP AACTAGAGCAC 55.0% identity Open · Scan
M00371_2.00 NN 70-40% CisBP ACTTAATATATAC 54.1% identity Open · Scan
M02389_2.00 NN 70-40% CisBP CAGGTCACT 53.6% identity Open · Scan
M02413_2.00 NN 70-40% CisBP CGAGATCAA 50.7% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 50.7% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 424 aa
15-110

Region 15-110 0 PWM

Residues
96 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1YNW
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 15-1101 model
Actions
Predicted = Low DIMER_A0A223ZRY6:15:110_1ynw_A_1 1ynw 15-110 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
20-88PF00105Double treble clef zinc finger, C4 typeoverlaps 15-110
225-399PF00104Ligand-binding domain of nuclear hormone receptorNo overlap with loaded model regions