ModCRE DB

Transcription factor

A0A455R6J4 - PHOX2B

Paired like homeobox 2B

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 314 aa

102 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)32
MotifPredictionSourceDNA bindingSupportLogoActions
MA0681.1 NN 70+% JASPAR TAATTTAATTA 99.6% identity Open · Scan
M05245_2.00 NN 70+% CisBP GTAATTAG 90.6% identity Open · Scan
M00354_2.00 NN 70+% CisBP CCGATTA 77.4% identity Open · Scan
MA0780.1 NN 70+% JASPAR TAATCGATTA 77.4% identity Open · Scan
M03776_2.00 NN 70+% CisBP TAATTGAATTA 76.5% identity Open · Scan
M03076_2.00 NN 70+% CisBP TTAATTAAATTAA 76.1% identity Open · Scan
MA0874.1 NN 70+% JASPAR GTCCATTAATTAATGGA 76.1% identity Open · Scan
M05419_2.00 NN 70+% CisBP CGATTAGTCACGGTT 75.8% identity Open · Scan
MA0680.1 NN 70+% JASPAR TAATCGATTA 75.8% identity Open · Scan
MA1481.1 NN 70+% JASPAR CTAATTAC 75.7% identity Open · Scan
M06322_2.00 NN 70+% CisBP TTAATTA 75.0% identity Open · Scan
M06326_2.00 NN 70+% CisBP TTAATT 75.0% identity Open · Scan
M03278_2.00 NN 70+% CisBP TTAATTTAATTAT 74.1% identity Open · Scan
M04917_2.00 NN 70+% CisBP GTAATTAG 74.1% identity Open · Scan
M10741_2.00 NN 70+% CisBP AACTAATTACCATTATCG 74.1% identity Open · Scan
MA0853.1 NN 70+% JASPAR CGCATTAATTAATTACC 74.1% identity Open · Scan
MA0854.1 NN 70+% JASPAR CGAATTAATTAATCACC 74.1% identity Open · Scan
M09569_2.00 NN 70+% CisBP GTTAATCCCT 72.7% identity Open · Scan
M00402_2.00 NN 70+% CisBP TAATTAG 71.8% identity Open · Scan
MA0634.1 NN 70+% JASPAR TCTAATTAAA 71.8% identity Open · Scan
M03121_2.00 NN 70+% CisBP TTAATTGG 71.2% identity Open · Scan
MA0716.1 NN 70+% JASPAR CTAATTAA 71.2% identity Open · Scan
M00417_2.00 NN 70+% CisBP GCTAATTA 70.9% identity Open · Scan
M03892_2.00 NN 70+% CisBP GATAATTGATTATC 70.9% identity Open · Scan
M09153_2.00 NN 70+% CisBP GTTAATCCCCT 70.9% identity Open · Scan
MA0712.1 NN 70+% JASPAR TTAATCCT 70.9% identity Open · Scan
MA0075.3 NN 70+% JASPAR CTAATTAA 70.7% identity Open · Scan
M03204_2.00 NN 70+% CisBP TTAATTGG 70.4% identity Open · Scan
M05367_2.00 NN 70+% CisBP TTAATTAG 70.4% identity Open · Scan
M09681_2.00 NN 70+% CisBP CTAATCCG 70.4% identity Open · Scan
MA0630.1 NN 70+% JASPAR TTAATTGG 70.4% identity Open · Scan
MA0720.1 NN 70+% JASPAR CTAATTAA 70.4% identity Open · Scan
Nearest Neighbor (70% - 40%)70
MotifPredictionSourceDNA bindingSupportLogoActions
M06555_2.00 NN 70-40% CisBP AGTAACAGT 69.6% identity Open · Scan
M03250_2.00 NN 70-40% CisBP TTAATCCG 69.3% identity Open · Scan
MA0711.1 NN 70-40% JASPAR TTAATCCG 69.3% identity Open · Scan
M03876_2.00 NN 70-40% CisBP TAATTAAATTA 68.8% identity Open · Scan
M06370_2.00 NN 70-40% CisBP TTAATTA 68.8% identity Open · Scan
MA0713.1 NN 70-40% JASPAR TAATTTAATTA 68.2% identity Open · Scan
MA0075.1 NN 70-40% JASPAR AATTA 68.1% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 67.6% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 67.1% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 67.1% identity Open · Scan
M02082_2.00 NN 70-40% CisBP ATTGTACAAT 66.6% identity Open · Scan
M02097_2.00 NN 70-40% CisBP AATTAATTAG 66.6% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 65.6% identity Open · Scan
M03851_2.00 NN 70-40% CisBP CTAATTGA 65.6% identity Open · Scan
MA0714.1 NN 70-40% JASPAR CTTAATCCC 65.6% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 65.5% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 65.0% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 65.0% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 64.6% identity Open · Scan
M06310_2.00 NN 70-40% CisBP TTAATTA 64.6% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 64.6% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 64.5% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 64.0% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 63.0% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 63.0% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 63.0% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 62.5% identity Open · Scan
M02231_2.00 NN 70-40% CisBP TTAATTGG 62.5% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 62.2% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 62.2% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 62.0% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 61.9% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 61.5% identity Open · Scan
MA0682.1 NN 70-40% JASPAR TTAATCCC 61.5% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 61.5% identity Open · Scan
M04941_2.00 NN 70-40% CisBP CTAATTAC 61.2% identity Open · Scan
MA0621.1 NN 70-40% JASPAR AATTAATTAGT 61.0% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 61.0% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 60.6% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 60.5% identity Open · Scan
M03855_2.00 NN 70-40% CisBP TAATTAGATTA 60.2% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 60.0% identity Open · Scan
M10806_2.00 NN 70-40% CisBP AATTTTCACGCATGAGTTCAC 59.7% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 59.7% identity Open · Scan
MA0654.1 NN 70-40% JASPAR CTAATTAA 59.3% identity Open · Scan
MA0662.1 NN 70-40% JASPAR TCTAATTAAC 59.3% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 58.7% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 58.3% identity Open · Scan
M06523_2.00 NN 70-40% CisBP TTAATTG 58.3% identity Open · Scan
M09208_2.00 NN 70-40% CisBP CCTAATCCTCTTA 58.3% identity Open · Scan
MA0467.1 NN 70-40% JASPAR AAGAGGATTAG 58.3% identity Open · Scan
M00674_2.00 NN 70-40% CisBP TTAATCCC 57.1% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 56.4% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 56.3% identity Open · Scan
M02221_2.00 NN 70-40% CisBP CTTAATTGGT 56.1% identity Open · Scan
M06552_2.00 NN 70-40% CisBP TTAATTA 55.8% identity Open · Scan
M00424_2.00 NN 70-40% CisBP ACTAATTA 55.3% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 55.3% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 55.1% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 53.9% identity Open · Scan
MA0891.1 NN 70-40% JASPAR CCTAATCCGC 53.4% identity Open · Scan
M02209_2.00 NN 70-40% CisBP AGCGGATATA 52.6% identity Open · Scan
MA0719.1 NN 70-40% JASPAR ATAATCCC 52.6% identity Open · Scan
M00679_2.00 NN 70-40% CisBP TTAATCCC 52.3% identity Open · Scan
MA0894.1 NN 70-40% JASPAR GCTAATTGGC 51.6% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 50.9% identity Open · Scan
M02195_2.00 NN 70-40% CisBP CCTAATCCGC 50.8% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 50.4% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 50.0% identity Open · Scan
MA0710.1 NN 70-40% JASPAR GCTAATTAGC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 314 aa
100-155

Region 100-155 0 PWM

Residues
56 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1DU0
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 100-1551 model
Actions
Predicted = Low DIMER_A0A455R6J4:100:155_1du0_B_1 1du0 100-155 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
99-155PF00046Homeodomainoverlaps 100-155