ModCRE DB

Transcription factor

A0A494C1I7 - ZNF587B

Zinc finger protein 587B

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 632 aa

55 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)45
MotifPredictionSourceDNA bindingSupportLogoActions
M07712_2.00 NN 70-40% CisBP ACATTTTTTTAATCTAAAAAAACATTTACA 68.9% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 64.7% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 64.7% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 64.6% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 63.5% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 63.0% identity Open · Scan
M07746_2.00 NN 70-40% CisBP CAGCTGGCGCCCAACATGGGTCCC 60.7% identity Open · Scan
M07601_2.00 NN 70-40% CisBP CAGATGCCGGCACCATGCTTC 59.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 58.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 58.8% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 58.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 57.6% identity Open · Scan
M07613_2.00 NN 70-40% CisBP TCACTCAGTCATTCA 56.9% identity Open · Scan
MA1154.1 NN 70-40% JASPAR CTTTCCCACAACACGAC 56.5% identity Open · Scan
M00939_2.00 NN 70-40% CisBP CCACCTCA 56.4% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 56.4% identity Open · Scan
M08887_2.00 NN 70-40% CisBP CCTCCTCCAGGAAGCCTTCCCTGA 55.2% identity Open · Scan
M04650_2.00 NN 70-40% CisBP GCATAACTGCCCCGCTGCC 54.7% identity Open · Scan
MA1124.1 NN 70-40% JASPAR CATTCATTCATTC 54.3% identity Open · Scan
M04387_2.00 NN 70-40% CisBP CGTGCTCCCC 53.9% identity Open · Scan
M07700_2.00 NN 70-40% CisBP ATGTTGTGAGGAAGCCCA 53.7% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 53.5% identity Open · Scan
M08267_2.00 NN 70-40% CisBP CAGTTTCATTTTCC 53.2% identity Open · Scan
M00782_2.00 NN 70-40% CisBP AGTGTGCGCTA 53.1% identity Open · Scan
M08325_2.00 NN 70-40% CisBP TTTTTTTTT 53.1% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 52.9% identity Open · Scan
M08314_2.00 NN 70-40% CisBP ATTCATCAAGGTCCTCAACAATGG 51.9% identity Open · Scan
M04611_2.00 NN 70-40% CisBP CTTTCGGACAC 51.8% identity Open · Scan
M04598_2.00 NN 70-40% CisBP CGCTAACTCTCCACA 51.7% identity Open · Scan
M07648_2.00 NN 70-40% CisBP GCTTGCAAAAAAAATTTAACTCCCAGCTC 51.7% identity Open · Scan
M08355_2.00 NN 70-40% CisBP GCGAACTCCTATTCATCC 51.1% identity Open · Scan
M08329_2.00 NN 70-40% CisBP GCTGCATAGTATTCC 51.0% identity Open · Scan
M01456_2.00 NN 70-40% CisBP GTGATCGGCG 50.9% identity Open · Scan
M08295_2.00 NN 70-40% CisBP CTGCTGGAATCTCCA 50.9% identity Open · Scan
M08949_2.00 NN 70-40% CisBP TTCTATTTCTTCTTGTGTCA 50.8% identity Open · Scan
M04465_2.00 NN 70-40% CisBP GTGATTCTTATCTTATCCTT 50.7% identity Open · Scan
M07620_2.00 NN 70-40% CisBP TTGGATCTGTGGATTCATGTCTTTCAT 50.7% identity Open · Scan
M08373_2.00 NN 70-40% CisBP CCCCCTGGCTCTTCCTCT 50.7% identity Open · Scan
MA1602.1 NN 70-40% JASPAR CGTCTACACGGG 50.7% identity Open · Scan
M04536_2.00 NN 70-40% CisBP ACGTAACCCGATACC 50.5% identity Open · Scan
M07649_2.00 NN 70-40% CisBP CCCCCCCCCCCCTCAGGAATGCC 50.5% identity Open · Scan
M00786_2.00 NN 70-40% CisBP TATATATAT 50.2% identity Open · Scan
M08903_2.00 NN 70-40% CisBP ATTCCATTCTATTCCATTCT 50.2% identity Open · Scan
M08263_2.00 NN 70-40% CisBP ATCTCGGCACTTTGGGAGGCCA 50.1% identity Open · Scan
M07578_2.00 NN 70-40% CisBP CAACTCTCC 50.0% identity Open · Scan
ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:306:459_2i13_A_1 ModCRE Homology model AAGCAGAAGGTGTCCTATATT Region 306-459 · 1 3D model Open · Scan
TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:324:600_5v3j_E_1 ModCRE Homology model CGTTGGTTAGCGGCCCCCCCCGGGAA Region 324-600 · 1 3D model Open · Scan
TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:324:600_5v3m_C_1 ModCRE Homology model GGCTCGGCCCCCCCCGGGGCGGGCCG Region 324-600 · 1 3D model Open · Scan
TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:350:627_5wjq_D_1 ModCRE Homology model GTTAGAGCCCCCACCGCCCCCGCCCCCC Region 350-627 · 1 3D model Open · Scan
a0a494c1i7.af3.0 ModCRE AlphaFold3 model CGGGGGAGAGTGTCAGTGGCGGGTGGGTGT AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1i7.af3.1 ModCRE AlphaFold3 model GGGTGGCGGGGGGGGACGGGGGGTGGGCCG AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1i7.af3.2 ModCRE AlphaFold3 model GGCCCCCCACTCGTCTCCCCGGACCCCCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1i7.af3.3 ModCRE AlphaFold3 model GGGGGGGGGGGGTGGACCGGGGGTGGGGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1i7.af3.4 ModCRE AlphaFold3 model CGGGGGAGAGTGTCAGTGGCGGGTGGGTGT AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1i7.af3.5 ModCRE AlphaFold3 model TAGTACTGGAACCTACAGCCGCACTTCTGC AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 632 aa
297-627

Region 297-627 4 PWM

Residues
331 aa
Domains
PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 5V3J, 5V3M, 5WJQ, 7W1M
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 297-6276 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A494C1I7_A0A494C1I7_HUMAN:547:598_1llm_D_1 1llm 547-598 View model · PDB
Predicted = Low TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:297:595_7w1m_H_1 7w1m 297-595 View model · PDB
Predicted = Low TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:306:459_2i13_A_1 2i13 306-459 View model · PDB
Predicted = Low TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:324:600_5v3j_E_1 5v3j 324-600 View model · PDB
Predicted = Low TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:324:600_5v3m_C_1 5v3m 324-600 View model · PDB
Predicted = Low TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:350:627_5wjq_D_1 5wjq 350-627 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
4 2i13 268:630 306 459 P:A · DNA:C,D 57.1% / 69.5% 100 View · PDB TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:306:459_2i13_A_1
1 5wjq 268:630 350 627 P:D · DNA:A,B 49.3% / 65.8% 98 View · PDB TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:350:627_5wjq_D_1
2 5v3m 268:630 324 600 P:C · DNA:A,B 48.4% / 66.4% 100 View · PDB TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:324:600_5v3m_C_1
3 5v3j 268:630 324 600 P:E · DNA:A,B 48.4% / 66.4% 100 View · PDB TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:324:600_5v3j_E_1
1 1llm 268:630 547,547 598,598 P:C,D · DNA:A,B 42.3% / 63.5% 59,61 View · PDB DIMER_tr_A0A494C1I7_A0A494C1I7_HUMAN:547:598_1llm_D_1
5 7w1m 268:630 297 595 P:H · DNA:F,G 33.4% / 49.7% 92 View · PDB TFS_tr_A0A494C1I7_A0A494C1I7_HUMAN:297:595_7w1m_H_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a494c1i7.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1i7.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1i7.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1i7.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1i7.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1i7.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
14-54PF01352KRAB boxNo overlap with loaded model regions
241-263PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
269-291PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
299-319PF00096Zinc finger, C2H2 typeoverlaps 297-627
325-347PF00096Zinc finger, C2H2 typeoverlaps 297-627
353-375PF00096Zinc finger, C2H2 typeoverlaps 297-627
381-403PF00096Zinc finger, C2H2 typeoverlaps 297-627
409-431PF00096Zinc finger, C2H2 typeoverlaps 297-627
437-459PF00096Zinc finger, C2H2 typeoverlaps 297-627
465-487PF00096Zinc finger, C2H2 typeoverlaps 297-627
521-543PF00096Zinc finger, C2H2 typeoverlaps 297-627
549-571PF00096Zinc finger, C2H2 typeoverlaps 297-627
577-599PF00096Zinc finger, C2H2 typeoverlaps 297-627
607-627PF00096Zinc finger, C2H2 typeoverlaps 297-627