ModCRE DB

Transcription factor

A0A494C1N8 - GTF2IRD2B

GTF2I repeat domain containing 2B

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1116 aa

7 Generated PWM 19 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE7
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A494C1N8_A0A494C1N8_HUMAN:20:152_1hlv_A_1 ModCRE Homology model ACGACGGTTTTAAAAAATTTT Region 20-152 · 1 3D model Open · Scan
a0a494c1n8.af3.0 ModCRE AlphaFold3 model CCAACGGGCATAGGTTTATAAGGGGGGCCG AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1n8.af3.1 ModCRE AlphaFold3 model CCCGTGTGGCGGCTTATGGGGGGGGCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1n8.af3.2 ModCRE AlphaFold3 model CCCCCCCGCTTCATTCGGCACACAGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1n8.af3.3 ModCRE AlphaFold3 model CCAACGGGCATAGGTTTATAAGGGGGGCCG AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1n8.af3.4 ModCRE AlphaFold3 model CCCCCCCCCCCTTTACCGGCACGTGGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a494c1n8.af3.5 ModCRE AlphaFold3 model GGGGGCCCTTTTTTAAAAAACGTCGCCGGC AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1116 aa
20-152

Region 20-152 1 PWM

Residues
133 aa
Domains
PF04218 · CENP-B N-terminal DNA-binding domain PF03221 · Tc5 transposase DNA-binding domain
3D models
1 active PDB · 1 summary row
Templates
1HLV
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
19 active PDB models 1 summary row
Region 20-1521 model · 1 summary row
Actions
Predicted = Low TFS_tr_A0A494C1N8_A0A494C1N8_HUMAN:20:152_1hlv_A_1 1hlv 20-152 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1hlv 20:152 20 152 P:A · DNA:B,C 26.1% / 47.0% 96 View · PDB TFS_tr_A0A494C1N8_A0A494C1N8_HUMAN:20:152_1hlv_A_1
Full sequence / unlocalized models18 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a494c1n8.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_dimer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_dimer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_dimer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_dimer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_dimer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_dimer.af3.5-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_monomer.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_monomer.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_monomer.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_monomer.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_monomer.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a494c1n8_monomer.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
17-70PF04218CENP-B N-terminal DNA-binding domainoverlaps 20-152
91-158PF03221Tc5 transposase DNA-binding domainoverlaps 20-152
269-343PF02946GTF2I-like repeatNo overlap with loaded model regions
494-567PF02946GTF2I-like repeatNo overlap with loaded model regions
596-656PF18658Spin-doc/GT2D2-like, zinc finger domainNo overlap with loaded model regions
665-804PF27073FAM200/ZBED5 RNase-likeNo overlap with loaded model regions
820-965PF27046FAM200/GTF2IRD2 helical domainNo overlap with loaded model regions