ModCRE DB

Transcription factor

A0A5F9ZHY1 - OTX2

Orthodenticle homeobox 2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 168 aa

102 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)10
MotifPredictionSourceDNA bindingSupportLogoActions
M09681_2.00 NN 70+% CisBP CTAATCCG 96.9% identity Open · Scan
M09569_2.00 NN 70+% CisBP GTTAATCCCT 91.8% identity Open · Scan
MA0711.1 NN 70+% JASPAR TTAATCCG 82.0% identity Open · Scan
M03250_2.00 NN 70+% CisBP TTAATCCG 81.2% identity Open · Scan
M00417_2.00 NN 70+% CisBP GCTAATTA 75.0% identity Open · Scan
MA1481.1 NN 70+% JASPAR CTAATTAC 72.8% identity Open · Scan
M03855_2.00 NN 70+% CisBP TAATTAGATTA 72.1% identity Open · Scan
MA0681.1 NN 70+% JASPAR TAATTTAATTA 72.1% identity Open · Scan
MA0713.1 NN 70+% JASPAR TAATTTAATTA 72.1% identity Open · Scan
M06310_2.00 NN 70+% CisBP TTAATTA 71.4% identity Open · Scan
Nearest Neighbor (70% - 40%)92
MotifPredictionSourceDNA bindingSupportLogoActions
M09208_2.00 NN 70-40% CisBP CCTAATCCTCTTA 67.2% identity Open · Scan
MA0467.1 NN 70-40% JASPAR AAGAGGATTAG 67.2% identity Open · Scan
M03076_2.00 NN 70-40% CisBP TTAATTAAATTAA 66.1% identity Open · Scan
MA0874.1 NN 70-40% JASPAR GTCCATTAATTAATGGA 66.1% identity Open · Scan
M03876_2.00 NN 70-40% CisBP TAATTAAATTA 65.5% identity Open · Scan
M06326_2.00 NN 70-40% CisBP TTAATT 65.0% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 64.0% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 63.9% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 63.9% identity Open · Scan
M06322_2.00 NN 70-40% CisBP TTAATTA 63.9% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 63.9% identity Open · Scan
M03204_2.00 NN 70-40% CisBP TTAATTGG 63.4% identity Open · Scan
M05367_2.00 NN 70-40% CisBP TTAATTAG 63.4% identity Open · Scan
MA0630.1 NN 70-40% JASPAR TTAATTGG 63.4% identity Open · Scan
MA0720.1 NN 70-40% JASPAR CTAATTAA 63.4% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 63.3% identity Open · Scan
MA0621.1 NN 70-40% JASPAR AATTAATTAGT 62.9% identity Open · Scan
M03121_2.00 NN 70-40% CisBP TTAATTGG 62.7% identity Open · Scan
MA0075.1 NN 70-40% JASPAR AATTA 62.7% identity Open · Scan
MA0075.3 NN 70-40% JASPAR CTAATTAA 62.7% identity Open · Scan
MA0716.1 NN 70-40% JASPAR CTAATTAA 62.7% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 62.6% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 62.6% identity Open · Scan
M00354_2.00 NN 70-40% CisBP CCGATTA 62.2% identity Open · Scan
M05419_2.00 NN 70-40% CisBP CGATTAGTCACGGTT 62.2% identity Open · Scan
MA0680.1 NN 70-40% JASPAR TAATCGATTA 62.2% identity Open · Scan
MA0780.1 NN 70-40% JASPAR TAATCGATTA 62.2% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 62.0% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 62.0% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 62.0% identity Open · Scan
M10741_2.00 NN 70-40% CisBP AACTAATTACCATTATCG 62.0% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 62.0% identity Open · Scan
MA0854.1 NN 70-40% JASPAR CGAATTAATTAATCACC 62.0% identity Open · Scan
M02231_2.00 NN 70-40% CisBP TTAATTGG 61.6% identity Open · Scan
M06370_2.00 NN 70-40% CisBP TTAATTA 61.2% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 61.0% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 60.9% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 60.6% identity Open · Scan
M03278_2.00 NN 70-40% CisBP TTAATTTAATTAT 60.3% identity Open · Scan
M04917_2.00 NN 70-40% CisBP GTAATTAG 60.3% identity Open · Scan
MA0634.1 NN 70-40% JASPAR TCTAATTAAA 60.3% identity Open · Scan
MA0853.1 NN 70-40% JASPAR CGCATTAATTAATTACC 60.3% identity Open · Scan
M00415_2.00 NN 70-40% CisBP TTAATCCCC 60.0% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 60.0% identity Open · Scan
MA0682.1 NN 70-40% JASPAR TTAATCCC 60.0% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 60.0% identity Open · Scan
M00274_2.00 NN 70-40% CisBP GCTAATCCGA 59.6% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 59.3% identity Open · Scan
M05245_2.00 NN 70-40% CisBP GTAATTAG 59.3% identity Open · Scan
M10806_2.00 NN 70-40% CisBP AATTTTCACGCATGAGTTCAC 59.3% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 59.3% identity Open · Scan
M00402_2.00 NN 70-40% CisBP TAATTAG 59.0% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 59.0% identity Open · Scan
MA0714.1 NN 70-40% JASPAR CTTAATCCC 59.0% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 58.2% identity Open · Scan
MA0712.1 NN 70-40% JASPAR TTAATCCT 58.1% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 57.6% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 57.6% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 57.6% identity Open · Scan
M02097_2.00 NN 70-40% CisBP AATTAATTAG 57.4% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 57.3% identity Open · Scan
M02195_2.00 NN 70-40% CisBP CCTAATCCGC 57.1% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 56.9% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 56.8% identity Open · Scan
M03851_2.00 NN 70-40% CisBP CTAATTGA 56.6% identity Open · Scan
M09153_2.00 NN 70-40% CisBP GTTAATCCCCT 56.5% identity Open · Scan
M02082_2.00 NN 70-40% CisBP ATTGTACAAT 55.8% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 55.7% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 55.7% identity Open · Scan
M00424_2.00 NN 70-40% CisBP ACTAATTA 55.5% identity Open · Scan
MA0891.1 NN 70-40% JASPAR CCTAATCCGC 55.3% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 55.1% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 54.8% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 54.7% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 54.0% identity Open · Scan
MA0662.1 NN 70-40% JASPAR TCTAATTAAC 53.9% identity Open · Scan
MA0894.1 NN 70-40% JASPAR GCTAATTGGC 53.5% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 53.4% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 52.7% identity Open · Scan
MA0884.1 NN 70-40% JASPAR CTAATTTAATCAA 52.6% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 52.5% identity Open · Scan
MA0654.1 NN 70-40% JASPAR CTAATTAA 52.5% identity Open · Scan
M06241_2.00 NN 70-40% CisBP CGTTAATTATTT 52.4% identity Open · Scan
M04941_2.00 NN 70-40% CisBP CTAATTAC 52.0% identity Open · Scan
M06523_2.00 NN 70-40% CisBP TTAATTG 52.0% identity Open · Scan
M00679_2.00 NN 70-40% CisBP TTAATCCC 51.6% identity Open · Scan
M00674_2.00 NN 70-40% CisBP TTAATCCC 51.5% identity Open · Scan
M06552_2.00 NN 70-40% CisBP TTAATTA 50.0% identity Open · Scan
M08135_2.00 NN 70-40% CisBP TAATTTAATCA 50.0% identity Open · Scan
MA0468.1 NN 70-40% JASPAR TAATTTAATCA 50.0% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 50.0% identity Open · Scan
MA1463.1 NN 70-40% JASPAR TCTAATTAAA 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 168 aa
37-96

Region 37-96 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 37-961 model
Actions
Predicted = Low DIMER_A0A5F9ZHY1:37:96_1fjl_A_1 1fjl 37-96 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
39-95PF00046Homeodomainoverlaps 37-96