Transcription factor

A0A804HJ42 - ZSCAN12

Zinc finger and SCAN domain-containing protein 12 (Zinc finger protein 96)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 611 aa

100 Generated PWM 26 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)91

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
M00953_2.00	NN 70-40%	CisBP	ATCTATAT	65.4% identity		Open · Scan
M00952_2.00	NN 70-40%	CisBP	GGATGCTC	62.6% identity		Open · Scan
M00955_2.00	NN 70-40%	CisBP	ACGTCCTCT	62.6% identity		Open · Scan
M08325_2.00	NN 70-40%	CisBP	TTTTTTTTT	62.3% identity		Open · Scan
M07635_2.00	NN 70-40%	CisBP	AAGTTTTCTTGTATTATATCT	61.2% identity		Open · Scan
M00944_2.00	NN 70-40%	CisBP	TCGCTATAA	61.1% identity		Open · Scan
M04653_2.00	NN 70-40%	CisBP	GGTACGGTTGTCCATGTTGCAA	60.9% identity		Open · Scan
M08375_2.00	NN 70-40%	CisBP	TTCCCCATTGGCTACTGCACCGGTCCT	60.3% identity		Open · Scan
M00943_2.00	NN 70-40%	CisBP	CCCGCTGC	60.2% identity		Open · Scan
M00959_2.00	NN 70-40%	CisBP	GCCCTCCC	60.0% identity		Open · Scan
M00960_2.00	NN 70-40%	CisBP	TGCATCCC	60.0% identity		Open · Scan
M07689_2.00	NN 70-40%	CisBP	ACCCAGGCTCCTTCCATCTTGTGGCTC	59.7% identity		Open · Scan
M00950_2.00	NN 70-40%	CisBP	GCAGCCCA	59.3% identity		Open · Scan
M00939_2.00	NN 70-40%	CisBP	CCACCTCA	59.0% identity		Open · Scan
M00958_2.00	NN 70-40%	CisBP	CGGCATCCC	58.8% identity		Open · Scan
M00948_2.00	NN 70-40%	CisBP	GCAGCACC	57.6% identity		Open · Scan
M07700_2.00	NN 70-40%	CisBP	ATGTTGTGAGGAAGCCCA	57.2% identity		Open · Scan
M00769_2.00	NN 70-40%	CisBP	ACTCCCCC	56.9% identity		Open · Scan
M08944_2.00	NN 70-40%	CisBP	TACCATGCTGTTTTGATTAC	56.7% identity		Open · Scan
M08267_2.00	NN 70-40%	CisBP	CAGTTTCATTTTCC	56.5% identity		Open · Scan
MA1587.1	NN 70-40%	JASPAR	CCTCGACCTCCTGA	56.5% identity		Open · Scan
M00782_2.00	NN 70-40%	CisBP	AGTGTGCGCTA	56.3% identity		Open · Scan
M07706_2.00	NN 70-40%	CisBP	GTCTTTGAGAGGGCCCAGATGTTGGACTTA	56.3% identity		Open · Scan
M08355_2.00	NN 70-40%	CisBP	GCGAACTCCTATTCATCC	56.3% identity		Open · Scan
M08255_2.00	NN 70-40%	CisBP	CTCTTCCGGT	56.2% identity		Open · Scan
M08309_2.00	NN 70-40%	CisBP	AAAAACCCCCCTGCAGAGCCCAGCCCT	56.1% identity		Open · Scan
M08934_2.00	NN 70-40%	CisBP	GCTGTACCTGCTTATTAGGC	56.1% identity		Open · Scan
M00945_2.00	NN 70-40%	CisBP	CACCGCAC	55.8% identity		Open · Scan
M04650_2.00	NN 70-40%	CisBP	GCATAACTGCCCCGCTGCC	55.6% identity		Open · Scan
M08254_2.00	NN 70-40%	CisBP	CTGCCCTGGGACTTT	55.5% identity		Open · Scan
M08329_2.00	NN 70-40%	CisBP	GCTGCATAGTATTCC	55.5% identity		Open · Scan
M08908_2.00	NN 70-40%	CisBP	GCTGCTGCTTCTGCTG	55.5% identity		Open · Scan
M05853_2.00	NN 70-40%	CisBP	CCACCTTTAGCCATATCT	55.4% identity		Open · Scan
M08245_2.00	NN 70-40%	CisBP	TGGTGCCTTATTCCC	55.4% identity		Open · Scan
M04610_2.00	NN 70-40%	CisBP	CGGCGACGCGAACAC	55.3% identity		Open · Scan
M08274_2.00	NN 70-40%	CisBP	TTACTTGCAGCCCAACGCATTCCTAAC	55.2% identity		Open · Scan
M07658_2.00	NN 70-40%	CisBP	CCGCCGCAGCCGCCG	55.1% identity		Open · Scan
M04387_2.00	NN 70-40%	CisBP	CGTGCTCCCC	54.5% identity		Open · Scan
M07764_2.00	NN 70-40%	CisBP	CTGCACTCTCCCCTTCCCCCCCTCCCC	54.5% identity		Open · Scan
M07598_2.00	NN 70-40%	CisBP	CTGACAATACCAAGTGTTGAC	54.3% identity		Open · Scan
M08347_2.00	NN 70-40%	CisBP	GCCCTGGGCAGC	54.3% identity		Open · Scan
M07581_2.00	NN 70-40%	CisBP	TCCCCTGTGCTTCTCTCCCCT	54.2% identity		Open · Scan
M07707_2.00	NN 70-40%	CisBP	TCCCGC	54.1% identity		Open · Scan
M08252_2.00	NN 70-40%	CisBP	CCGGCTCCAGCACCC	54.1% identity		Open · Scan
M07605_2.00	NN 70-40%	CisBP	TATTTTTTTTTATTTTTTTTTTTTTTTTTT	54.0% identity		Open · Scan
M04598_2.00	NN 70-40%	CisBP	CGCTAACTCTCCACA	53.9% identity		Open · Scan
M07579_2.00	NN 70-40%	CisBP	CATCTCCAGGA	53.7% identity		Open · Scan
M06108_2.00	NN 70-40%	CisBP	ACAACAACAAC	53.6% identity		Open · Scan
M07600_2.00	NN 70-40%	CisBP	GCATTAGC	53.5% identity		Open · Scan
M07646_2.00	NN 70-40%	CisBP	CTTTTTTTT	53.4% identity		Open · Scan
M07649_2.00	NN 70-40%	CisBP	CCCCCCCCCCCCTCAGGAATGCC	53.4% identity		Open · Scan
M07699_2.00	NN 70-40%	CisBP	GGTTTAT	53.3% identity		Open · Scan
M07588_2.00	NN 70-40%	CisBP	TCCTTCCCTCTTTCC	53.0% identity		Open · Scan
M07712_2.00	NN 70-40%	CisBP	ACATTTTTTTAATCTAAAAAAACATTTACA	52.9% identity		Open · Scan
M07610_2.00	NN 70-40%	CisBP	CCTTCTTCCTCCCCCCTGCCCACC	52.8% identity		Open · Scan
M07587_2.00	NN 70-40%	CisBP	CCCCCTCCCCAGTCGAGCCCCCGC	52.7% identity		Open · Scan
M08291_2.00	NN 70-40%	CisBP	AATCCAGCCCTAGACTCTCCC	52.7% identity		Open · Scan
M07667_2.00	NN 70-40%	CisBP	CCGCACAGGCCCCCGGGCCCC	52.6% identity		Open · Scan
M07753_2.00	NN 70-40%	CisBP	TGCATTCCTTGGCTTGTG	52.4% identity		Open · Scan
M04536_2.00	NN 70-40%	CisBP	ACGTAACCCGATACC	52.3% identity		Open · Scan
M07593_2.00	NN 70-40%	CisBP	AGATGAAGTCACCCCTCTTAC	52.3% identity		Open · Scan
M08395_2.00	NN 70-40%	CisBP	GCTGCCTACTCTTCC	52.1% identity		Open · Scan
M08334_2.00	NN 70-40%	CisBP	TTTGTTTTTTTCTGATTGCTTTTTACTTAT	52.0% identity		Open · Scan
M08373_2.00	NN 70-40%	CisBP	CCCCCTGGCTCTTCCTCT	51.9% identity		Open · Scan
M00786_2.00	NN 70-40%	CisBP	TATATATAT	51.8% identity		Open · Scan
M06179_2.00	NN 70-40%	CisBP	TAAGCCTATAGA	51.8% identity		Open · Scan
M04505_2.00	NN 70-40%	CisBP	AGCTTTTCCCACAC	51.7% identity		Open · Scan
M04621_2.00	NN 70-40%	CisBP	AGCAATTCCGCTCA	51.7% identity		Open · Scan
M07660_2.00	NN 70-40%	CisBP	CCGCGCCTACCTGAGGGCGCGGGCCTGGGG	51.7% identity		Open · Scan
MA1589.1	NN 70-40%	JASPAR	TAGGAGTGGAATTGCTGGGTC	51.7% identity		Open · Scan
M08292_2.00	NN 70-40%	CisBP	TGTATTCCTTGTCATGTGTGG	51.6% identity		Open · Scan
M08311_2.00	NN 70-40%	CisBP	CTGGAACAGAAGGGGCGA	51.6% identity		Open · Scan
M07686_2.00	NN 70-40%	CisBP	TAGCTTGTTTCCAGCCAC	51.5% identity		Open · Scan
M08283_2.00	NN 70-40%	CisBP	GACTTTTATTTT	51.5% identity		Open · Scan
MA1154.1	NN 70-40%	JASPAR	CTTTCCCACAACACGAC	51.5% identity		Open · Scan
M07714_2.00	NN 70-40%	CisBP	AGCCCATTGGGGCCTATGCCC	51.3% identity		Open · Scan
M08399_2.00	NN 70-40%	CisBP	TACTCTGGGGCCACATGACTC	51.3% identity		Open · Scan
M07729_2.00	NN 70-40%	CisBP	CCAGACTGCCTGCCAAAACCCCCT	51.2% identity		Open · Scan
M07746_2.00	NN 70-40%	CisBP	CAGCTGGCGCCCAACATGGGTCCC	51.2% identity		Open · Scan
M08256_2.00	NN 70-40%	CisBP	GTGCCTT	51.2% identity		Open · Scan
M07578_2.00	NN 70-40%	CisBP	CAACTCTCC	51.1% identity		Open · Scan
M07601_2.00	NN 70-40%	CisBP	CAGATGCCGGCACCATGCTTC	51.1% identity		Open · Scan
M08860_2.00	NN 70-40%	CisBP	TCTTATAAGGGCACTAATCCCATT	51.0% identity		Open · Scan
M08371_2.00	NN 70-40%	CisBP	CCAGACTTGTCCTCT	50.9% identity		Open · Scan
M07678_2.00	NN 70-40%	CisBP	CCCGCCCCCTCCTCCCCCTTCCCACCC	50.8% identity		Open · Scan
M08342_2.00	NN 70-40%	CisBP	GCTCTGCCTCCCTCT	50.6% identity		Open · Scan
M08914_2.00	NN 70-40%	CisBP	ATTTAGTCCATTTACATTTAATGT	50.6% identity		Open · Scan
M07761_2.00	NN 70-40%	CisBP	CTGATTATTCACCCA	50.1% identity		Open · Scan
M08386_2.00	NN 70-40%	CisBP	GCCTTAAAAGCTCAGCAC	50.1% identity		Open · Scan
M08917_2.00	NN 70-40%	CisBP	GCTGAGCCATGTGGGGTGCT	50.1% identity		Open · Scan
M01181_2.00	NN 70-40%	CisBP	GCGCATCCCC	50.0% identity		Open · Scan

ModCRE9

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
DIMER_tr_A0A804HJ42_A0A804HJ42_HUMAN:384:437_1llm_C_1	ModCRE	Homology model	TTCGGCGCCAAA	Region 384-437 · 1 3D model		Open · Scan
TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:466:575_5egb_A_1	ModCRE	Homology model	TCGGGCCCAGGGGGTGGG	Region 466-575 · 1 3D model		Open · Scan
TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:466:575_5ei9_E_1	ModCRE	Homology model	CCCCCCCCCCGGGGCCC	Region 466-575 · 1 3D model		Open · Scan
a0a804hj42.af3.0	ModCRE	AlphaFold3 model	CGGCGGGGGTGGCGGGGGGCCCGGGGGGCC	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a804hj42.af3.1	ModCRE	AlphaFold3 model	CGACATGGGGGGGCCCCCCCCCCCCTGTCG	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a804hj42.af3.2	ModCRE	AlphaFold3 model	CAGACCCCCAATCCCCCCCCCCCACTGTCG	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a804hj42.af3.3	ModCRE	AlphaFold3 model	CGGCGGGGGTGGCGGGGGGCCCGGGGGGCC	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a804hj42.af3.4	ModCRE	AlphaFold3 model	CACGACGACCCTAACGCCCCCCCACTCCAG	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a804hj42.af3.5	ModCRE	AlphaFold3 model	CGGGGGGGTGGGAAGAGGACACATGTAAAA	AlphaFold3 model · ModCRE PWM		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 611 aa

299-603

Region 299-603 3 PWM

Residues

305 aa

Domains

PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type PF00096 · Zinc finger, C2H2 type

3D models

8 active PDBs · 6 summary rows

Templates

1LLM, 2I13, 5EGB, 5EI9, 5V3J, 5V3M, 5WJQ, 7W1M

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

26 active PDB models 6 summary rows

Region 299-6038 models · 6 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	DIMER_tr_A0A804HJ42_A0A804HJ42_HUMAN:384:437_1llm_C_1	1llm	384-437	View model · PDB
Predicted = Low	TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:299:575_5wjq_D_1	5wjq	299-575	View model · PDB
Predicted = Low	TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:302:599_7w1m_H_1	7w1m	302-599	View model · PDB
Predicted = Low	TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:329:603_5v3j_E_1	5v3j	329-603	View model · PDB
Predicted = Low	TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:329:603_5v3m_C_1	5v3m	329-603	View model · PDB
Predicted = Low	TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:423:575_2i13_A_1	2i13	423-575	View model · PDB
Predicted = Low	TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:466:575_5egb_A_1	5egb	466-575	View model · PDB
Predicted = Low	TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:466:575_5ei9_E_1	5ei9	466-575	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
4	2i13	273:606	423	575	P:A · DNA:C,D	57.1% / 68.8%	99	View · PDB TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:423:575_2i13_A_1
3	5wjq	273:606	299	575	P:D · DNA:A,B	52.5% / 69.1%	98	View · PDB TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:299:575_5wjq_D_1
1	5v3m	273:606	329	603	P:C · DNA:A,B	51.4% / 68.5%	99	View · PDB TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:329:603_5v3m_C_1
2	5v3j	273:606	329	603	P:E · DNA:A,B	51.4% / 68.5%	99	View · PDB TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:329:603_5v3j_E_1
1	1llm	273:606	384,384	437,437	P:C,D · DNA:A,B	42.6% / 59.3%	62,63	View · PDB DIMER_tr_A0A804HJ42_A0A804HJ42_HUMAN:384:437_1llm_C_1
5	7w1m	273:606	302	599	P:H · DNA:F,G	35.1% / 51.6%	92	View · PDB TFS_tr_A0A804HJ42_A0A804HJ42_HUMAN:302:599_7w1m_H_1

Full sequence / unlocalized models18 models

Source	Model	Template	Residues modeled	Actions
Predicted = Low	a0a804hj42.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42.af3.5	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_dimer.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_dimer.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_dimer.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_dimer.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_dimer.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_dimer.af3.5	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_monomer.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_monomer.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_monomer.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_monomer.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_monomer.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a804hj42_monomer.af3.5	-	Full sequence / not localized	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
43-130	PF02023	SCAN domain	No overlap with loaded model regions
276-296	PF00096	Zinc finger, C2H2 type	No overlap with loaded model regions
302-324	PF00096	Zinc finger, C2H2 type	overlaps 299-603
330-352	PF00096	Zinc finger, C2H2 type	overlaps 299-603
358-380	PF00096	Zinc finger, C2H2 type	overlaps 299-603
386-408	PF00096	Zinc finger, C2H2 type	overlaps 299-603
414-436	PF00096	Zinc finger, C2H2 type	overlaps 299-603
442-463	PF00096	Zinc finger, C2H2 type	overlaps 299-603
469-491	PF00096	Zinc finger, C2H2 type	overlaps 299-603
497-519	PF00096	Zinc finger, C2H2 type	overlaps 299-603
525-547	PF00096	Zinc finger, C2H2 type	overlaps 299-603
553-575	PF00096	Zinc finger, C2H2 type	overlaps 299-603
581-603	PF00096	Zinc finger, C2H2 type	overlaps 299-603