ModCRE DB

Transcription factor

A0A8I5KUH8 - RARB

Retinoic acid receptor beta (Nuclear receptor subfamily 1 group B member 2)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 111 aa

71 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)10
MotifPredictionSourceDNA bindingSupportLogoActions
M05563_2.00 NN 70+% CisBP AAAAGGTCAA 98.0% identity Open · Scan
MA1552.1 NN 70+% JASPAR AAGGTCATGACCTT 98.0% identity Open · Scan
M03424_2.00 NN 70+% CisBP AAAGGTCACCAGAGGTCA 97.0% identity Open · Scan
MA0857.1 NN 70+% JASPAR AAAGGTCAAAAGGTCA 97.0% identity Open · Scan
MA0159.1 NN 70+% JASPAR AGGTCACGGAGAGGTCA 85.1% identity Open · Scan
M03432_2.00 NN 70+% CisBP AAAGGTCAAGAGAGGTCA 84.1% identity Open · Scan
M09277_2.00 NN 70+% CisBP GGGGGATCAAGAGGTCAAGG 83.5% identity Open · Scan
M03392_2.00 NN 70+% CisBP AAGGTCAACTAAAGGTCA 77.6% identity Open · Scan
MA0859.1 NN 70+% JASPAR AAGGTCAAAAGGTCAA 77.6% identity Open · Scan
MA1553.1 NN 70+% JASPAR AAGGTCATGACCTT 77.6% identity Open · Scan
Nearest Neighbor (70% - 40%)61
MotifPredictionSourceDNA bindingSupportLogoActions
M01298_2.00 NN 70-40% CisBP AAAGGTCA 64.0% identity Open · Scan
M05635_2.00 NN 70-40% CisBP GTGACCTCAATGAGGTCAC 61.7% identity Open · Scan
MA0160.1 NN 70-40% JASPAR AAGGTCAC 61.5% identity Open · Scan
M00812_2.00 NN 70-40% CisBP AGAGGTCACG 60.3% identity Open · Scan
M03939_2.00 NN 70-40% CisBP TAAAGGTCA 59.6% identity Open · Scan
M00811_2.00 NN 70-40% CisBP AAAGGTCAAG 59.3% identity Open · Scan
M05599_2.00 NN 70-40% CisBP AAAGGTCAA 58.4% identity Open · Scan
MA1535.1 NN 70-40% JASPAR CGAGGTCAC 58.4% identity Open · Scan
M02388_2.00 NN 70-40% CisBP GAGGTCA 58.0% identity Open · Scan
M06413_2.00 NN 70-40% CisBP AAATAGGTCA 58.0% identity Open · Scan
M05604_2.00 NN 70-40% CisBP TAAAGGTCAC 57.6% identity Open · Scan
MA1112.1 NN 70-40% JASPAR AAAAGGTCAC 57.6% identity Open · Scan
M03426_2.00 NN 70-40% CisBP GGGGTCAAAGTCCAAT 57.5% identity Open · Scan
MA0071.1 NN 70-40% JASPAR ATCAAGGTCA 57.3% identity Open · Scan
MA0677.1 NN 70-40% JASPAR GAGGTCAAAGGTCA 57.1% identity Open · Scan
MA1539.1 NN 70-40% JASPAR AAGGTCACTGACCTT 57.1% identity Open · Scan
M05660_2.00 NN 70-40% CisBP GATGTGGGTCAGTGGGTCAG 56.8% identity Open · Scan
M11139_2.00 NN 70-40% CisBP AAGTAGGTCACCGTGACCTACTT 56.8% identity Open · Scan
MA0065.1 NN 70-40% JASPAR CCAGGGGTCAAAGGTCATCG 56.8% identity Open · Scan
MA0065.2 NN 70-40% JASPAR GTAGGGCAAAGGTCA 56.8% identity Open · Scan
MA1110.1 NN 70-40% JASPAR TCAATGACCTA 56.8% identity Open · Scan
MA1531.1 NN 70-40% JASPAR GGGTCAGTAGGTCAG 56.8% identity Open · Scan
MA1532.1 NN 70-40% JASPAR GGGTTAGTGGGTCAT 56.8% identity Open · Scan
M05590_2.00 NN 70-40% CisBP TTCAAGGTCAC 56.6% identity Open · Scan
M05669_2.00 NN 70-40% CisBP GAGGTCAT 56.6% identity Open · Scan
MA0504.1 NN 70-40% JASPAR AGGGGTCAGAGGTCA 56.6% identity Open · Scan
MA1541.1 NN 70-40% JASPAR GTCAAGTTCAAGGTCAA 55.7% identity Open · Scan
MA1574.1 NN 70-40% JASPAR GGGGTCAAAGGTCAT 55.5% identity Open · Scan
M02392_2.00 NN 70-40% CisBP GAGGTCAA 55.1% identity Open · Scan
M06417_2.00 NN 70-40% CisBP CAGTCCGAAGGTCACCGC 54.7% identity Open · Scan
MA0114.1 NN 70-40% JASPAR AGGCCAAAGGTCA 54.5% identity Open · Scan
MA0114.3 NN 70-40% JASPAR GGGGTCAAAGTCCAAT 54.5% identity Open · Scan
MA0484.1 NN 70-40% JASPAR AGAGTCCAAAGTCCA 54.5% identity Open · Scan
M02418_2.00 NN 70-40% CisBP CGGAAGCAAA 54.1% identity Open · Scan
M00820_2.00 NN 70-40% CisBP TAGGTCACC 54.0% identity Open · Scan
M02405_2.00 NN 70-40% CisBP AGAGGTCAGT 54.0% identity Open · Scan
MA1150.1 NN 70-40% JASPAR AATTAGGTCAC 54.0% identity Open · Scan
M02393_2.00 NN 70-40% CisBP AGAGGTCAC 53.1% identity Open · Scan
M00822_2.00 NN 70-40% CisBP GAGGTCAC 53.0% identity Open · Scan
M05661_2.00 NN 70-40% CisBP GGGGTCAAAGGTCAG 53.0% identity Open · Scan
MA0017.1 NN 70-40% JASPAR TGACCTTTGAACCT 53.0% identity Open · Scan
MA1111.1 NN 70-40% JASPAR CAAAGGTCAAA 53.0% identity Open · Scan
M03421_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 52.8% identity Open · Scan
M09616_2.00 NN 70-40% CisBP TTCAAGGTCA 52.8% identity Open · Scan
MA0505.1 NN 70-40% JASPAR AAGTTCAAGGTCAGC 52.8% identity Open · Scan
MA1540.1 NN 70-40% JASPAR GTCAAGGTCAC 52.8% identity Open · Scan
M03927_2.00 NN 70-40% CisBP GAAACTAGAGCA 52.7% identity Open · Scan
M05621_2.00 NN 70-40% CisBP TAGGTCATGACCTA 52.4% identity Open · Scan
MA1151.1 NN 70-40% JASPAR ATAAGTAGGTCA 52.4% identity Open · Scan
M02408_2.00 NN 70-40% CisBP TGAGGTCAATTT 50.9% identity Open · Scan
M03435_2.00 NN 70-40% CisBP GGGGTCAAAGGTCA 50.9% identity Open · Scan
M05584_2.00 NN 70-40% CisBP AGAGGTCACGACCTCT 50.9% identity Open · Scan
M09296_2.00 NN 70-40% CisBP TCAAGGTCA 50.9% identity Open · Scan
M09309_2.00 NN 70-40% CisBP AGGTCAGGGTGACCT 50.9% identity Open · Scan
M11192_2.00 NN 70-40% CisBP GGGGTCACG 50.9% identity Open · Scan
MA0112.1 NN 70-40% JASPAR CCAGGTCACCGTGACCCC 50.9% identity Open · Scan
MA0141.1 NN 70-40% JASPAR AGCTCAAGGTCA 50.9% identity Open · Scan
MA0141.3 NN 70-40% JASPAR TCAAGGTCATA 50.9% identity Open · Scan
MA0643.1 NN 70-40% JASPAR TCAAGGTCAT 50.9% identity Open · Scan
MA0855.1 NN 70-40% JASPAR GGGGTCAAAGGTCA 50.9% identity Open · Scan
MA1550.1 NN 70-40% JASPAR AGGGGTCAAAGGTCAA 50.9% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 111 aa
1-52

Region 1-52 0 PWM

Residues
52 aa
Domains
PF00105 · Double treble clef zinc finger, C4 type
3D models
1 active PDB
Templates
1DSZ
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 1-521 model
Actions
Predicted = Low DIMER_A0A8I5KUH8:1:52_1dsz_A_1 1dsz 1-52 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
1-46PF00105Double treble clef zinc finger, C4 typeoverlaps 1-52