ModCRE DB

Transcription factor

A0A8J9C2I7 - PITX2

Homeobox protein

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 290 aa

111 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)7
MotifPredictionSourceDNA bindingSupportLogoActions
MA1547.1 NN 70+% JASPAR ATAATCCC 99.2% identity Open · Scan
M00440_2.00 NN 70+% CisBP TTAATCCC 98.8% identity Open · Scan
M00415_2.00 NN 70+% CisBP TTAATCCCC 93.1% identity Open · Scan
M04929_2.00 NN 70+% CisBP CTAATCCG 87.6% identity Open · Scan
MA0682.1 NN 70+% JASPAR TTAATCCC 76.5% identity Open · Scan
MA0682.2 NN 70+% JASPAR CTAATCCC 76.1% identity Open · Scan
M01241_2.00 NN 70+% CisBP TTAATCCC 73.6% identity Open · Scan
Nearest Neighbor (70% - 40%)104
MotifPredictionSourceDNA bindingSupportLogoActions
M03076_2.00 NN 70-40% CisBP TTAATTAAATTAA 67.1% identity Open · Scan
MA0874.1 NN 70-40% JASPAR GTCCATTAATTAATGGA 67.1% identity Open · Scan
M03855_2.00 NN 70-40% CisBP TAATTAGATTA 65.6% identity Open · Scan
M06322_2.00 NN 70-40% CisBP TTAATTA 65.6% identity Open · Scan
M06326_2.00 NN 70-40% CisBP TTAATT 65.6% identity Open · Scan
MA1481.1 NN 70-40% JASPAR CTAATTAC 65.6% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 64.2% identity Open · Scan
MA0681.1 NN 70-40% JASPAR TAATTTAATTA 64.0% identity Open · Scan
MA0713.1 NN 70-40% JASPAR TAATTTAATTA 64.0% identity Open · Scan
M00354_2.00 NN 70-40% CisBP CCGATTA 63.9% identity Open · Scan
MA0780.1 NN 70-40% JASPAR TAATCGATTA 63.9% identity Open · Scan
MA0714.1 NN 70-40% JASPAR CTTAATCCC 63.5% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 62.2% identity Open · Scan
MA0075.1 NN 70-40% JASPAR AATTA 61.5% identity Open · Scan
MA0075.3 NN 70-40% JASPAR CTAATTAA 61.5% identity Open · Scan
M02209_2.00 NN 70-40% CisBP AGCGGATATA 60.6% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 60.6% identity Open · Scan
M03236_2.00 NN 70-40% CisBP GTTAATCCGC 60.5% identity Open · Scan
MA0883.1 NN 70-40% JASPAR TGAACCGGATTAATGAA 60.5% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 60.0% identity Open · Scan
M09569_2.00 NN 70-40% CisBP GTTAATCCCT 60.0% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 59.0% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 58.6% identity Open · Scan
M03278_2.00 NN 70-40% CisBP TTAATTTAATTAT 58.4% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 58.4% identity Open · Scan
MA0853.1 NN 70-40% JASPAR CGCATTAATTAATTACC 58.4% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 58.3% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 58.3% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 57.9% identity Open · Scan
M06310_2.00 NN 70-40% CisBP TTAATTA 57.8% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 57.8% identity Open · Scan
MA0891.1 NN 70-40% JASPAR CCTAATCCGC 57.7% identity Open · Scan
M09153_2.00 NN 70-40% CisBP GTTAATCCCCT 57.5% identity Open · Scan
M09681_2.00 NN 70-40% CisBP CTAATCCG 57.5% identity Open · Scan
M02097_2.00 NN 70-40% CisBP AATTAATTAG 57.4% identity Open · Scan
M03828_2.00 NN 70-40% CisBP GTTAATTAACGTTAATTAAC 57.3% identity Open · Scan
M03876_2.00 NN 70-40% CisBP TAATTAAATTA 57.3% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 57.1% identity Open · Scan
M03121_2.00 NN 70-40% CisBP TTAATTGG 57.1% identity Open · Scan
MA0716.1 NN 70-40% JASPAR CTAATTAA 57.1% identity Open · Scan
MA0662.1 NN 70-40% JASPAR TCTAATTAAC 56.8% identity Open · Scan
M04917_2.00 NN 70-40% CisBP GTAATTAG 56.7% identity Open · Scan
M03887_2.00 NN 70-40% CisBP GATAATCGATTATC 56.6% identity Open · Scan
M03903_2.00 NN 70-40% CisBP ATAATTGATTAT 56.6% identity Open · Scan
M00417_2.00 NN 70-40% CisBP GCTAATTA 56.4% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 56.2% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 56.2% identity Open · Scan
M03250_2.00 NN 70-40% CisBP TTAATCCG 56.0% identity Open · Scan
MA0711.1 NN 70-40% JASPAR TTAATCCG 56.0% identity Open · Scan
M02082_2.00 NN 70-40% CisBP ATTGTACAAT 55.9% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 55.7% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 55.7% identity Open · Scan
MA0712.1 NN 70-40% JASPAR TTAATCCT 55.7% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 55.7% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 55.5% identity Open · Scan
MA0621.1 NN 70-40% JASPAR AATTAATTAGT 55.1% identity Open · Scan
M03204_2.00 NN 70-40% CisBP TTAATTGG 54.9% identity Open · Scan
MA0720.1 NN 70-40% JASPAR CTAATTAA 54.9% identity Open · Scan
M05367_2.00 NN 70-40% CisBP TTAATTAG 54.5% identity Open · Scan
MA0630.1 NN 70-40% JASPAR TTAATTGG 54.5% identity Open · Scan
M09208_2.00 NN 70-40% CisBP CCTAATCCTCTTA 54.4% identity Open · Scan
MA0467.1 NN 70-40% JASPAR AAGAGGATTAG 54.4% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 54.2% identity Open · Scan
M02231_2.00 NN 70-40% CisBP TTAATTGG 53.9% identity Open · Scan
M06552_2.00 NN 70-40% CisBP TTAATTA 53.8% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 53.3% identity Open · Scan
MA0654.1 NN 70-40% JASPAR CTAATTAA 53.1% identity Open · Scan
M05419_2.00 NN 70-40% CisBP CGATTAGTCACGGTT 53.0% identity Open · Scan
MA0680.1 NN 70-40% JASPAR TAATCGATTA 53.0% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 52.9% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 52.6% identity Open · Scan
M00349_2.00 NN 70-40% CisBP CTAATTAGC 52.5% identity Open · Scan
M02195_2.00 NN 70-40% CisBP CCTAATCCGC 52.5% identity Open · Scan
M06370_2.00 NN 70-40% CisBP TTAATTA 52.5% identity Open · Scan
M10741_2.00 NN 70-40% CisBP AACTAATTACCATTATCG 52.5% identity Open · Scan
MA0068.1 NN 70-40% JASPAR GAAAAATTTCCAATACTCCACTCCCCCCCC 52.5% identity Open · Scan
MA0068.2 NN 70-40% JASPAR CTAATTAG 52.5% identity Open · Scan
MA0854.1 NN 70-40% JASPAR CGAATTAATTAATCACC 52.5% identity Open · Scan
M00403_2.00 NN 70-40% CisBP CTAATTACC 51.8% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 51.8% identity Open · Scan
M05133_2.00 NN 70-40% CisBP CTAATCCC 51.8% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 51.8% identity Open · Scan
M06545_2.00 NN 70-40% CisBP TTAATTA 51.8% identity Open · Scan
MA0900.1 NN 70-40% JASPAR CCTAATTACC 51.8% identity Open · Scan
MA0902.1 NN 70-40% JASPAR AGTAATTAAC 51.8% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 51.7% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 51.5% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 51.1% identity Open · Scan
M06261_2.00 NN 70-40% CisBP TTAATTA 50.9% identity Open · Scan
M03104_2.00 NN 70-40% CisBP TTAATTACGGTAATTAC 50.8% identity Open · Scan
M03271_2.00 NN 70-40% CisBP GTAATTAC 50.8% identity Open · Scan
M05272_2.00 NN 70-40% CisBP TTAACGAG 50.8% identity Open · Scan
MA0661.1 NN 70-40% JASPAR GCTAATTAAC 50.8% identity Open · Scan
MA0706.1 NN 70-40% JASPAR AGTAATTAAC 50.8% identity Open · Scan
MA0125.1 NN 70-40% JASPAR TAATTGGT 50.7% identity Open · Scan
M00679_2.00 NN 70-40% CisBP TTAATCCC 50.6% identity Open · Scan
M02221_2.00 NN 70-40% CisBP CTTAATTGGT 50.0% identity Open · Scan
M03832_2.00 NN 70-40% CisBP GGTAATTACC 50.0% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 50.0% identity Open · Scan
M04941_2.00 NN 70-40% CisBP CTAATTAC 50.0% identity Open · Scan
M10806_2.00 NN 70-40% CisBP AATTTTCACGCATGAGTTCAC 50.0% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 50.0% identity Open · Scan
MA0611.1 NN 70-40% JASPAR CCAATCAA 50.0% identity Open · Scan
MA0719.1 NN 70-40% JASPAR ATAATCCC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 290 aa
57-116

Region 57-116 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 57-1161 model
Actions
Predicted = Low DIMER_A0A8J9C2I7:57:116_1fjl_A_1 1fjl 57-116 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
59-115PF00046Homeodomainoverlaps 57-116
248-265PF03826OAR motifNo overlap with loaded model regions