ModCRE DB

Transcription factor

A0A8J9GB59 - ARID1B

AT-rich interaction domain 1B

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1486 aa

8 Generated PWM 8 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A8J9GB59_A0A8J9GB59_HUMAN:292:392_1kqq_A_1 ModCRE Homology model AATAACAAAAATA Region 292-392 · 1 3D model Open · Scan
TFS_tr_A0A8J9GB59_A0A8J9GB59_HUMAN:316:401_2oeh_A_1 ModCRE Homology model TTGTTTCGTACTA Region 316-401 · 1 3D model Open · Scan
a0a8j9gb59.af3.0 ModCRE AlphaFold3 model AAAGGGGTACGCGGCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a8j9gb59.af3.1 ModCRE AlphaFold3 model AAATTAAAAAAAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a8j9gb59.af3.2 ModCRE AlphaFold3 model GCCCGCGCGCGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a8j9gb59.af3.3 ModCRE AlphaFold3 model GGTCGCGGCGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a8j9gb59.af3.4 ModCRE AlphaFold3 model AAAGGGGTACGCGGCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a8j9gb59.af3.5 ModCRE AlphaFold3 model GGGCCCGCGGG AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1486 aa
292-401

Region 292-401 2 PWM

Residues
110 aa
Domains
PF01388 · ARID/BRIGHT DNA binding domain
3D models
2 active PDBs · 2 summary rows
Templates
1KQQ, 2OEH
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models 2 summary rows
Region 292-4012 models · 2 summary rows
Actions
Predicted = Low TFS_tr_A0A8J9GB59_A0A8J9GB59_HUMAN:292:392_1kqq_A_1 1kqq 292-392 View model · PDB
Predicted = Low TFS_tr_A0A8J9GB59_A0A8J9GB59_HUMAN:316:401_2oeh_A_1 2oeh 316-401 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 1kqq 292:401 292 392 P:A · DNA:B,C 38.2% / 69.6% 77 View · PDB TFS_tr_A0A8J9GB59_A0A8J9GB59_HUMAN:292:392_1kqq_A_1
2 2oeh 292:401 316 401 P:A · DNA:B,C 22.1% / 55.8% 80 View · PDB TFS_tr_A0A8J9GB59_A0A8J9GB59_HUMAN:316:401_2oeh_A_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a8j9gb59.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8j9gb59.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8j9gb59.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8j9gb59.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8j9gb59.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8j9gb59.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
306-390PF01388ARID/BRIGHT DNA binding domainoverlaps 292-401
1177-1432PF12031SWI/SNF-like complex subunit BAF250/OsaNo overlap with loaded model regions