ModCRE DB

Transcription factor

A0A8Q3SI57 - TRERF1

Transcriptional regulating factor 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1212 aa

11 Generated PWM 11 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE11
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:1098:1123_6ml3_A_1 ModCRE Homology model GGATCCACGC Region 1098-1123 · 1 3D model Open · Scan
TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:1100:1120_6wmi_A_1 ModCRE Homology model CTCAGAGGTA Region 1100-1120 · 1 3D model Open · Scan
TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:513:538_6ki6_A_1 ModCRE Homology model GAACGACCC Region 513-538 · 1 3D model Open · Scan
TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:513:538_6u9q_A_1 ModCRE Homology model GAACCGCTT Region 513-538 · 1 3D model Open · Scan
TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:514:536_1g2d_C_1 ModCRE Homology model TTCCTGGGCCCCC Region 514-536 · 1 3D model Open · Scan
a0a8q3si57.af3.0 ModCRE AlphaFold3 model CCCCTGGGTACCCGGGGAGTACCCGGTTCT AlphaFold3 model · ModCRE PWM Open · Scan
a0a8q3si57.af3.1 ModCRE AlphaFold3 model GGGGCGGCGCCCCCTAGGGCGGCGCCGCAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a8q3si57.af3.2 ModCRE AlphaFold3 model CCCCTGGGTACCCGGGGAGTACCCGGTTCT AlphaFold3 model · ModCRE PWM Open · Scan
a0a8q3si57.af3.3 ModCRE AlphaFold3 model GCCTCTAGCTTGTCTCAACAGTGGTACTAC AlphaFold3 model · ModCRE PWM Open · Scan
a0a8q3si57.af3.4 ModCRE AlphaFold3 model CCCGGGGGGCGACGTGTTTTTGGTGCAGAT AlphaFold3 model · ModCRE PWM Open · Scan
a0a8q3si57.af3.5 ModCRE AlphaFold3 model TTTTAAAAATCTACGGTTTTGTACGGGGC AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1212 aa
513-538
1098-1123

Region 513-538 3 PWM

Residues
26 aa
Domains
PF13912 · C2H2-type zinc finger
3D models
3 active PDBs · 3 summary rows
Templates
1G2D, 6KI6, 6U9Q
Sources
Predicted = Low
Scan this region Show models

Region 1098-1123 2 PWM

Residues
26 aa
Domains
PF13912 · C2H2-type zinc finger
3D models
2 active PDBs · 2 summary rows
Templates
6ML3, 6WMI
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
11 active PDB models 5 summary rows
Region 513-5383 models · 3 summary rows
Actions
Predicted = Low TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:513:538_6ki6_A_1 6ki6 513-538 View model · PDB
Predicted = Low TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:513:538_6u9q_A_1 6u9q 513-538 View model · PDB
Predicted = Low TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:514:536_1g2d_C_1 1g2d 514-536 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
2 6ki6 1095:1134 513 538 P:A · DNA:C,D 53.8% / 53.8% 32 View · PDB TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:513:538_6ki6_A_1
3 6u9q 1095:1134 513 538 P:A · DNA:B,C 53.8% / 53.8% 29 View · PDB TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:513:538_6u9q_A_1
4 1g2d 1095:1134 514 536 P:C · DNA:A,B 43.5% / 60.9% 25 View · PDB TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:514:536_1g2d_C_1
Region 1098-11232 models · 2 summary rows
Actions
Predicted = Low TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:1098:1123_6ml3_A_1 6ml3 1098-1123 View model · PDB
Predicted = Low TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:1100:1120_6wmi_A_1 6wmi 1100-1120 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6wmi 1095:1134 1100 1120 P:A · DNA:E,F 52.4% / 66.7% 14 View · PDB TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:1100:1120_6wmi_A_1
5 6ml3 1095:1134 1098 1123 P:A · DNA:E,F 38.5% / 61.5% 23 View · PDB TFS_tr_A0A8Q3SI57_A0A8Q3SI57_HUMAN:1098:1123_6ml3_A_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a8q3si57.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8q3si57.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8q3si57.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8q3si57.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8q3si57.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a8q3si57.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
514-534PF13912C2H2-type zinc fingeroverlaps 513-538
781-835PF01448ELM2 domainNo overlap with loaded model regions
1098-1123PF13912C2H2-type zinc fingeroverlaps 1098-1123