ModCRE DB

Transcription factor

A0A8Q3SIT6 - GATA1

GATA binding protein 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 343 aa

27 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)6
MotifPredictionSourceDNA bindingSupportLogoActions
M10581_2.00 NN 70+% CisBP GCAGATAACA 97.2% identity Open · Scan
MA0035.4 NN 70+% JASPAR TTCTAATCTAT 96.2% identity Open · Scan
MA0035.1 NN 70+% JASPAR GGATGG 83.9% identity Open · Scan
M04875_2.00 NN 70+% CisBP GAGATAACGC 70.4% identity Open · Scan
MA0482.1 NN 70+% JASPAR TCTTATCTCCC 70.4% identity Open · Scan
MA0482.2 NN 70+% JASPAR TTCCTTATCTTT 70.4% identity Open · Scan
Nearest Neighbor (70% - 40%)21
MotifPredictionSourceDNA bindingSupportLogoActions
MA0766.1 NN 70-40% JASPAR AGATAAGA 68.5% identity Open · Scan
MA1104.1 NN 70-40% JASPAR AAAAGATAAGAAA 66.3% identity Open · Scan
M00166_2.00 NN 70-40% CisBP TAGAGATAAG 65.2% identity Open · Scan
M10587_2.00 NN 70-40% CisBP AGAGATAAGA 65.2% identity Open · Scan
MA0037.1 NN 70-40% JASPAR AGATAG 64.6% identity Open · Scan
M02007_2.00 NN 70-40% CisBP TTACAGATCT 60.7% identity Open · Scan
MA0036.1 NN 70-40% JASPAR GGATA 58.6% identity Open · Scan
M00052_2.00 NN 70-40% CisBP ACGATATCGT 57.8% identity Open · Scan
M00667_2.00 NN 70-40% CisBP ACAGATAAGG 57.1% identity Open · Scan
M03761_2.00 NN 70-40% CisBP GCGATAAG 57.1% identity Open · Scan
M02012_2.00 NN 70-40% CisBP ACGATCGA 56.6% identity Open · Scan
M01545_2.00 NN 70-40% CisBP AGATAAG 56.4% identity Open · Scan
M06893_2.00 NN 70-40% CisBP CAGATCGGATT 55.8% identity Open · Scan
M01229_2.00 NN 70-40% CisBP ACAGATCA 54.8% identity Open · Scan
M02014_2.00 NN 70-40% CisBP TCAGATCTA 53.3% identity Open · Scan
M01994_2.00 NN 70-40% CisBP CAGATCTA 51.6% identity Open · Scan
M02010_2.00 NN 70-40% CisBP CCGATCT 51.5% identity Open · Scan
M06885_2.00 NN 70-40% CisBP TCGATCGGATTAG 51.5% identity Open · Scan
M02017_2.00 NN 70-40% CisBP CAGATAAG 50.7% identity Open · Scan
M01995_2.00 NN 70-40% CisBP CAGATCTA 50.0% identity Open · Scan
M06897_2.00 NN 70-40% CisBP ATGATGATGATGATGATGATGATGATG 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 343 aa
118-240

Region 118-240 0 PWM

Residues
123 aa
Domains
PF00320 · GATA zinc finger PF00320 · GATA zinc finger
3D models
1 active PDB
Templates
3VD6
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 118-2401 model
Actions
Predicted = Low TFS_A0A8Q3SIT6:118:240_3vd6_C_1 3vd6 118-240 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
121-154PF00320GATA zinc fingeroverlaps 118-240
175-207PF00320GATA zinc fingeroverlaps 118-240