ModCRE DB

Transcription factor

A0A994J4C0 - ZMYND11

Zinc finger MYND domain-containing protein 11

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 562 aa

8 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A994J4C0_A0A994J4C0_HUMAN:242:258_5xsk_B_1 ModCRE Homology model CCGGGCCG Region 242-258 · 1 3D model Open · Scan
TFS_tr_A0A994J4C0_A0A994J4C0_HUMAN:242:258_8pc6_K_1 ModCRE Homology model GCCGGGCG Region 242-258 · 1 3D model Open · Scan
TFS_tr_A0A994J4C0_A0A994J4C0_HUMAN:242:258_8pep_K_1 ModCRE Homology model CCCGGCCG Region 242-258 · 1 3D model Open · Scan
a0a994j4c0.af3.0 ModCRE AlphaFold3 model GATGGGCCCCACTAACACCCGGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j4c0.af3.2 ModCRE AlphaFold3 model GATGGGCCCCACTAACACCCGGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j4c0.af3.3 ModCRE AlphaFold3 model GTAGTCTTGGAAGATGCCAGGA AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j4c0.af3.4 ModCRE AlphaFold3 model AACGGGGTGTGCATGTGGGGAGCGGGA AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j4c0.af3.5 ModCRE AlphaFold3 model AAGTCGAGGGGGGGATCGAGG AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 562 aa
242-258

Region 242-258 3 PWM

Residues
17 aa
Domains
PF00855 · PWWP domain
3D models
3 active PDBs · 3 summary rows
Templates
5XSK, 8PC6, 8PEP
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models 3 summary rows
Region 242-2583 models · 3 summary rows
Actions
Predicted = Low TFS_tr_A0A994J4C0_A0A994J4C0_HUMAN:242:258_5xsk_B_1 5xsk 242-258 View model · PDB
Predicted = Low TFS_tr_A0A994J4C0_A0A994J4C0_HUMAN:242:258_8pc6_K_1 8pc6 242-258 View model · PDB
Predicted = Low TFS_tr_A0A994J4C0_A0A994J4C0_HUMAN:242:258_8pep_K_1 8pep 242-258 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 5xsk 242:258 242 258 P:B · DNA:D,F 58.8% / 88.2% 18 View · PDB TFS_tr_A0A994J4C0_A0A994J4C0_HUMAN:242:258_5xsk_B_1
2 8pep 242:258 242 258 P:K · DNA:I,J 58.8% / 88.2% 20 View · PDB TFS_tr_A0A994J4C0_A0A994J4C0_HUMAN:242:258_8pep_K_1
3 8pc6 242:258 242 258 P:K · DNA:I,J 58.8% / 88.2% 20 View · PDB TFS_tr_A0A994J4C0_A0A994J4C0_HUMAN:242:258_8pc6_K_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a994j4c0.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j4c0.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j4c0.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j4c0.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j4c0.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j4c0.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
142-201PF00439BromodomainNo overlap with loaded model regions
242-310PF00855PWWP domainoverlaps 242-258
426-478PF23461ZMYND11 protein coiled-coilNo overlap with loaded model regions
523-558PF24324ZMYND11/ZMYD8, MYND zinc fingerNo overlap with loaded model regions