Transcription factor

A0A994J4N4 - UBTF

Upstream binding transcription factor

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 610 aa

15 Generated PWM 17 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE15

Motif	Prediction	Source	DNA binding	Support	Logo	Actions
TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_4nod_A_1	ModCRE	Homology model	TTTAATAGCGATCT	Region 112-181 · 1 3D model		Open · Scan
TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_6erp_C_1	ModCRE	Homology model	GCTTTTAAACTTGATC	Region 112-181 · 1 3D model		Open · Scan
TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_6erq_C_1	ModCRE	Homology model	GTGTTGGGTATACTTTC	Region 112-181 · 1 3D model		Open · Scan
TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_7lbw_B_1	ModCRE	Homology model	GGGAAATAGGGATTTGAAAAGAAAAGAATACGGAAAATAGCGAA	Region 112-181 · 1 3D model		Open · Scan
TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_7lbx_A_1	ModCRE	Homology model	ATGGGAAAAATAAAACGTCCGGACTAA	Region 112-181 · 1 3D model		Open · Scan
TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_3tq6_A_1	ModCRE	Homology model	TTTTGAAACCACTTTTTAAACC	Region 233-337 · 1 3D model		Open · Scan
TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_6erp_C_1	ModCRE	Homology model	GGGTTTGGTTATTGGTCAGTCTTTAAAC	Region 233-337 · 1 3D model		Open · Scan
TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_6erq_C_1	ModCRE	Homology model	TTTCTGTACAATTGCCCCTGGAAATCTT	Region 233-337 · 1 3D model		Open · Scan
TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_6hb4_A_1	ModCRE	Homology model	CCTGGGGCCCGGCTATAAACCG	Region 233-337 · 1 3D model		Open · Scan
a0a994j4n4.af3.0	ModCRE	AlphaFold3 model	AAGTGCAGAGTGATATTTTCTGAGATTCAA	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a994j4n4.af3.1	ModCRE	AlphaFold3 model	AAGTGCAGAGTGATATTTTCTGAGATTCAA	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a994j4n4.af3.2	ModCRE	AlphaFold3 model	TACGAAAATTAACGGCCCGACGATTTTGGT	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a994j4n4.af3.3	ModCRE	AlphaFold3 model	GGCGAAAGATTCCCGGATTCGCGGAGCGGG	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a994j4n4.af3.4	ModCRE	AlphaFold3 model	GGGGAGGGTGGAGAATCCATGGGGGGC	AlphaFold3 model · ModCRE PWM		Open · Scan
a0a994j4n4.af3.5	ModCRE	AlphaFold3 model	CGGATTCATTGCGAAAAAGTTTATGGGCGC	AlphaFold3 model · ModCRE PWM		Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 610 aa

112-181

233-337

Region 112-181 5 PWM

Residues

70 aa

Domains

PF00505 · HMG (high mobility group) box

3D models

5 active PDBs · 5 summary rows

Templates

4NOD, 6ERP, 6ERQ, 7LBW, 7LBX

Sources

Predicted = Low

Scan this region Show models

Region 233-337 4 PWM

Residues

105 aa

Domains

PF09011 · HMG-box domain

3D models

6 active PDBs

Templates

3TQ6, 4NNU, 6ERP, 6ERQ, 6HB4

Sources

Predicted = Low

Scan this region Show models

3D Models

Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.

17 active PDB models 5 summary rows

Region 112-1815 models · 5 summary rows

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_4nod_A_1	4nod	112-181	View model · PDB
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_6erp_C_1	6erp	112-181	View model · PDB
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_6erq_C_1	6erq	112-181	View model · PDB
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_7lbw_B_1	7lbw	112-181	View model · PDB
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_7lbx_A_1	7lbx	112-181	View model · PDB

Model-summary evidence imported for this region.

Rank	Template	Domain	N-tails	C-tails	Chains	Identity / similarity	Coverage	Model file
1	6erq	112:181	112	181	P:C · DNA:D,E	30.0% / 61.4%	36	View · PDB TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_6erq_C_1
2	6erp	112:181	112	181	P:C · DNA:D,E	30.0% / 61.4%	36	View · PDB TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_6erp_C_1
3	7lbx	112:181	112	181	P:A · DNA:C,D,E,F	30.0% / 61.4%	36	View · PDB TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_7lbx_A_1
4	7lbw	112:181	112	181	P:B · DNA:C,D,E,F	30.0% / 61.4%	36	View · PDB TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_7lbw_B_1
5	4nod	112:181	112	181	P:A · DNA:C,D	30.0% / 61.4%	36	View · PDB TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:112:181_4nod_A_1

Region 233-3376 models

Source ↕	Model ↕	Template ↕	Residues modeled ↕	Actions
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_3tq6_A_1	3tq6	233-337	View model · PDB
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_4nnu_A_1	4nnu	233-337	View model · PDB
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_4nnu_B_1	4nnu	233-337	View model · PDB
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_6erp_C_1	6erp	233-337	View model · PDB
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_6erq_C_1	6erq	233-337	View model · PDB
Predicted = Low	TFS_tr_A0A994J4N4_A0A994J4N4_HUMAN:233:337_6hb4_A_1	6hb4	233-337	View model · PDB

Full sequence / unlocalized models6 models

Source	Model	Template	Residues modeled	Actions
Predicted = Low	a0a994j4n4.af3.0	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a994j4n4.af3.1	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a994j4n4.af3.2	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a994j4n4.af3.3	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a994j4n4.af3.4	-	Full sequence / not localized	View model · PDB
Predicted = Low	a0a994j4n4.af3.5	-	Full sequence / not localized	View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

Residues	PFAM	Domain	Used by prediction region?
112-179	PF00505	HMG (high mobility group) box	overlaps 112-181
262-320	PF09011	HMG-box domain	overlaps 233-337
370-431	PF00505	HMG (high mobility group) box	No overlap with loaded model regions
442-526	PF14887	HMG (high mobility group) box 5	No overlap with loaded model regions