ModCRE DB

Transcription factor

A0A994J5B8 - NCOR1

Nuclear receptor corepressor 1

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 2466 aa

10 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:628:679_3osg_A_1 ModCRE Homology model AATCTTTCGTTG Region 628-679 · 1 3D model Open · Scan
TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:636:691_6vyp_L_1 ModCRE Homology model GTTTTTAGAAAATTCG Region 636-691 · 1 3D model Open · Scan
TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:636:691_6vyp_N_1 ModCRE Homology model AAAATTTTTTAAAAA Region 636-691 · 1 3D model Open · Scan
TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:637:679_3osf_A_1 ModCRE Homology model AATTAAATCTTTT Region 637-679 · 1 3D model Open · Scan
a0a994j5b8.af3.0 ModCRE AlphaFold3 model GGACCCCCCCCATGGGCTACTAAAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5b8.af3.1 ModCRE AlphaFold3 model CGCGCCCCACCAATGATCCACAGGGGCGCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5b8.af3.2 ModCRE AlphaFold3 model GGACCCCCCCCATGGGCTACTAAAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5b8.af3.3 ModCRE AlphaFold3 model GGGCGCGTGGGACGCGACAGGGGCCGCGCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5b8.af3.4 ModCRE AlphaFold3 model TGCCCCCCCAGGGGGCCTATTAGGTCTCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5b8.af3.5 ModCRE AlphaFold3 model CCCACGCGCGGTCGTGGACCCCAAAAT AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 2466 aa
628-691

Region 628-691 4 PWM

Residues
64 aa
Domains
PF00249 · Myb-like DNA-binding domain
3D models
4 active PDBs · 4 summary rows
Templates
3OSF, 3OSG, 6VYP
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 4 summary rows
Region 628-6914 models · 4 summary rows
Actions
Predicted = Low TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:628:679_3osg_A_1 3osg 628-679 View model · PDB
Predicted = Low TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:636:691_6vyp_L_1 6vyp 636-691 View model · PDB
Predicted = Low TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:636:691_6vyp_N_1 6vyp 636-691 View model · PDB
Predicted = Low TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:637:679_3osf_A_1 3osf 637-679 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6vyp 628:691 636 691 P:N · DNA:I,J 44.6% / 73.2% 42 View · PDB TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:636:691_6vyp_N_1
2 6vyp 628:691 636 691 P:L · DNA:I,J 44.6% / 73.2% 42 View · PDB TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:636:691_6vyp_L_1
4 3osf 628:691 637 679 P:A · DNA:B,C 32.6% / 60.5% 41 View · PDB TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:637:679_3osf_A_1
3 3osg 628:691 628 679 P:A · DNA:B,C 26.9% / 57.7% 46 View · PDB TFS_tr_A0A994J5B8_A0A994J5B8_HUMAN:628:679_3osg_A_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a994j5b8.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5b8.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5b8.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5b8.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5b8.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5b8.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
150-238PF15784G-protein pathway suppressor 2-interacting domainNo overlap with loaded model regions
637-680PF00249Myb-like DNA-binding domainoverlaps 628-691
1941-1970PF27579Nuclear receptor corepressor 1 N-terminal domainNo overlap with loaded model regions