ModCRE DB

Transcription factor

A0A994J5C6 - ZNF536

Zinc finger protein 536

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 855 aa

51 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)39
MotifPredictionSourceDNA bindingSupportLogoActions
M08254_2.00 NN 70-40% CisBP CTGCCCTGGGACTTT 61.7% identity Open · Scan
M00769_2.00 NN 70-40% CisBP ACTCCCCC 58.6% identity Open · Scan
M00621_2.00 NN 70-40% CisBP CCCGCTGTGA 57.5% identity Open · Scan
M03690_2.00 NN 70-40% CisBP AACCACCTGTTA 55.1% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 54.7% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 54.7% identity Open · Scan
M04595_2.00 NN 70-40% CisBP GTTTCCGGTAAC 53.8% identity Open · Scan
M07703_2.00 NN 70-40% CisBP CCGACGG 53.0% identity Open · Scan
MA1558.1 NN 70-40% JASPAR GGCAGGTGCA 53.0% identity Open · Scan
MA1656.1 NN 70-40% JASPAR CCAAGCCCAACCAG 53.0% identity Open · Scan
M06112_2.00 NN 70-40% CisBP CTACTTTCACCGGGG 52.9% identity Open · Scan
MA0751.1 NN 70-40% JASPAR GACCCCCCGCTGTGC 52.9% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 52.8% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 52.8% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 52.8% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 52.8% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 52.8% identity Open · Scan
M08366_2.00 NN 70-40% CisBP GTTTGCTGCTTACAA 52.1% identity Open · Scan
MA0733.1 NN 70-40% JASPAR TTACGCCCACGCATTT 52.0% identity Open · Scan
MA0748.1 NN 70-40% JASPAR GTCCGCCATTA 52.0% identity Open · Scan
MA1651.1 NN 70-40% JASPAR GTTCCAAAATGGCTGCCTCCG 52.0% identity Open · Scan
M00217_2.00 NN 70-40% CisBP TTACTCAATAT 51.7% identity Open · Scan
MA0146.1 NN 70-40% JASPAR GGGGCCGAGGCCTG 51.7% identity Open · Scan
M09002_2.00 NN 70-40% CisBP CCACCTGG 51.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 50.9% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 50.9% identity Open · Scan
M03671_2.00 NN 70-40% CisBP ATTACCATACAAGTGCAC 50.9% identity Open · Scan
M04613_2.00 NN 70-40% CisBP CTCATGTGCTAATTACAAA 50.9% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 50.9% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 50.9% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 50.9% identity Open · Scan
M00609_2.00 NN 70-40% CisBP GGAAGCCCTA 50.0% identity Open · Scan
M00645_2.00 NN 70-40% CisBP CGCCCACGCA 50.0% identity Open · Scan
M00647_2.00 NN 70-40% CisBP CCCCCCC 50.0% identity Open · Scan
M02667_2.00 NN 70-40% CisBP TATTATCTTATCTT 50.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.0% identity Open · Scan
M03682_2.00 NN 70-40% CisBP ACGCCACGCCCAGT 50.0% identity Open · Scan
MA0029.1 NN 70-40% JASPAR AAGATAAGATAACA 50.0% identity Open · Scan
MA0088.2 NN 70-40% JASPAR TACCCACAATGCATTG 50.0% identity Open · Scan
ModCRE12
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A0A994J5C6_A0A994J5C6_HUMAN:128:176_1llm_C_1 ModCRE Homology model ATTGCGCGGGGA Region 128-176 · 1 3D model Open · Scan
TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:128:180_2i13_A_1 ModCRE Homology model GCATTGCTACAGAAA Region 128-180 · 1 3D model Open · Scan
TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_3uk3_C_1 ModCRE Homology model GCCCGGTGACG Region 132-180 · 1 3D model Open · Scan
TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_3uk3_D_1 ModCRE Homology model GATCACCCGC Region 132-180 · 1 3D model Open · Scan
TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_4is1_C_1 ModCRE Homology model CCCGGCTGACA Region 132-180 · 1 3D model Open · Scan
TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_4is1_D_1 ModCRE Homology model GGTCACCGGC Region 132-180 · 1 3D model Open · Scan
a0a994j5c6.af3.0 ModCRE AlphaFold3 model GGGGGAAAATCGGTCCCGTTCTAACCCATT AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5c6.af3.1 ModCRE AlphaFold3 model GGGGGAAAATCGGTCCCGTTCTAACCCATT AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5c6.af3.2 ModCRE AlphaFold3 model GGCGGATAATCTGCGGCGATTGAAGCGGGT AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5c6.af3.3 ModCRE AlphaFold3 model GGGGGTGAATCGCTGTCGATTTACCCCGGA AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5c6.af3.4 ModCRE AlphaFold3 model GGGTTGTTTTCTGCGGGTTTCAACCCCGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5c6.af3.5 ModCRE AlphaFold3 model GGGGTGAAAATGTCCCGGATTTGCCCCGAT AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 855 aa
128-180

Region 128-180 6 PWM

Residues
53 aa
Domains
PF00096 · Zinc finger, C2H2 type PF13909 · C2H2-type zinc-finger domain
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 2I13, 3UK3, 4IS1
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 128-1806 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A994J5C6_A0A994J5C6_HUMAN:128:176_1llm_C_1 1llm 128-176 View model · PDB
Predicted = Low TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:128:180_2i13_A_1 2i13 128-180 View model · PDB
Predicted = Low TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_3uk3_C_1 3uk3 132-180 View model · PDB
Predicted = Low TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_3uk3_D_1 3uk3 132-180 View model · PDB
Predicted = Low TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_4is1_C_1 4is1 132-180 View model · PDB
Predicted = Low TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_4is1_D_1 4is1 132-180 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 4is1 114:187 132 180 P:D · DNA:A,B 57.1% / 75.5% 90 View · PDB TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_4is1_D_1
2 3uk3 114:187 132 180 P:D · DNA:A,B 57.1% / 75.5% 90 View · PDB TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_3uk3_D_1
3 4is1 114:187 132 180 P:C · DNA:A,B 57.1% / 75.5% 94 View · PDB TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_4is1_C_1
4 3uk3 114:187 132 180 P:C · DNA:A,B 57.1% / 75.5% 94 View · PDB TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:132:180_3uk3_C_1
5 2i13 114:187 128 180 P:A · DNA:C,D 52.8% / 64.2% 35 View · PDB TFS_tr_A0A994J5C6_A0A994J5C6_HUMAN:128:180_2i13_A_1
1 1llm 114:187 128,128 176,176 P:C,D · DNA:A,B 38.8% / 57.1% 56,57 View · PDB DIMER_tr_A0A994J5C6_A0A994J5C6_HUMAN:128:176_1llm_C_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a994j5c6.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5c6.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5c6.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5c6.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5c6.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5c6.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
130-152PF00096Zinc finger, C2H2 typeoverlaps 128-180
158-181PF13909C2H2-type zinc-finger domainoverlaps 128-180
345-367PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
632-653PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions
657-737PF16606Unstructured conserved, between two C2H2-type zinc-fingersNo overlap with loaded model regions
753-773PF00096Zinc finger, C2H2 typeNo overlap with loaded model regions