ModCRE DB

Transcription factor

A0A994J5J9 - PHC2

Polyhomeotic homolog 2

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 881 aa

8 Generated PWM 8 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE8
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryd_B_1 ModCRE Homology model TGGCTTCCCTCCCCGG Region 217-253 · 1 3D model Open · Scan
DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryi_B_1 ModCRE Homology model AAGACCCCGGGGGCCA Region 217-253 · 1 3D model Open · Scan
DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_A_1 ModCRE Homology model TGCTCTTCCCAAAAAA Region 217-253 · 1 3D model Open · Scan
DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_C_1 ModCRE Homology model CGCTGGGCCTCCCGG Region 217-253 · 1 3D model Open · Scan
TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryd_B_1 ModCRE Homology model CCGGGGAGGGAAGCCA Region 217-253 · 1 3D model Open · Scan
TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryi_B_1 ModCRE Homology model TTGACCCCGGAGTCTT Region 217-253 · 1 3D model Open · Scan
TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_A_1 ModCRE Homology model TTAATTGGGAAGAGCA Region 217-253 · 1 3D model Open · Scan
TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_C_1 ModCRE Homology model CCGGGAGGCCCAGCG Region 217-253 · 1 3D model Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 881 aa
217-253

Region 217-253 8 PWM

Residues
37 aa
Domains
No overlapping PFAM annotation recorded
3D models
8 active PDBs · 8 summary rows
Templates
6RYD, 6RYI, 6RYL
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
8 active PDB models 8 summary rows
Region 217-2538 models · 8 summary rows
Actions
Predicted = Low DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryd_B_1 6ryd 217-253 View model · PDB
Predicted = Low DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryi_B_1 6ryi 217-253 View model · PDB
Predicted = Low DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_A_1 6ryl 217-253 View model · PDB
Predicted = Low DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_C_1 6ryl 217-253 View model · PDB
Predicted = Low TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryd_B_1 6ryd 217-253 View model · PDB
Predicted = Low TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryi_B_1 6ryi 217-253 View model · PDB
Predicted = Low TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_A_1 6ryl 217-253 View model · PDB
Predicted = Low TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_C_1 6ryl 217-253 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 6ryi 217:253 217,217 253,253 P:A,B · DNA:F,G 35.1% / 51.4% 62,62 View · PDB DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryi_B_1
1 6ryi 217:253 217,217 253,253 P:A,B · DNA:F,G 35.1% / 51.4% 62,62 View · PDB TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryi_B_1
2 6ryd 217:253 217,217 253,253 P:A,B · DNA:C,D 35.1% / 51.4% 53,62 View · PDB DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryd_B_1
2 6ryd 217:253 217,217 253,253 P:A,B · DNA:C,D 35.1% / 51.4% 53,62 View · PDB TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryd_B_1
3 6ryl 217:253 217,217 253,253 P:B,C · DNA:F,G 35.1% / 51.4% 57,57 View · PDB DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_C_1
3 6ryl 217:253 217,217 253,253 P:B,C · DNA:F,G 35.1% / 51.4% 57,57 View · PDB TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_C_1
4 6ryl 217:253 217,217 253,253 P:A,C · DNA:F,G 35.1% / 51.4% 60,57 View · PDB DIMER_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_A_1
4 6ryl 217:253 217,217 253,253 P:A,C · DNA:F,G 35.1% / 51.4% 60,57 View · PDB TFS_tr_A0A994J5J9_A0A994J5J9_HUMAN:217:253_6ryl_C_1

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
663-692PF21319Zinc finger, FCS-typeNo overlap with loaded model regions
693-812PF16616Unstructured region on Polyhomeotic-like protein 1 and 2No overlap with loaded model regions
816-879PF00536SAM domain (Sterile alpha motif)No overlap with loaded model regions