ModCRE DB

Transcription factor

A0A994J5Q4 - ZNF536

Zinc finger protein 536

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 630 aa

73 Generated PWM 12 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)61
MotifPredictionSourceDNA bindingSupportLogoActions
M08979_2.00 NN 70-40% CisBP CCCACCCTCC 61.2% identity Open · Scan
M00909_2.00 NN 70-40% CisBP AGGACCCTGT 58.0% identity Open · Scan
M00948_2.00 NN 70-40% CisBP GCAGCACC 56.8% identity Open · Scan
M00959_2.00 NN 70-40% CisBP GCCCTCCC 56.8% identity Open · Scan
M00960_2.00 NN 70-40% CisBP TGCATCCC 56.8% identity Open · Scan
M08513_2.00 NN 70-40% CisBP GGACCCT 56.6% identity Open · Scan
M00769_2.00 NN 70-40% CisBP ACTCCCCC 56.0% identity Open · Scan
M08334_2.00 NN 70-40% CisBP TTTGTTTTTTTCTGATTGCTTTTTACTTAT 56.0% identity Open · Scan
M08934_2.00 NN 70-40% CisBP GCTGTACCTGCTTATTAGGC 55.5% identity Open · Scan
M00149_2.00 NN 70-40% CisBP CGTACGCC 55.1% identity Open · Scan
M00953_2.00 NN 70-40% CisBP ATCTATAT 55.1% identity Open · Scan
M00958_2.00 NN 70-40% CisBP CGGCATCCC 55.1% identity Open · Scan
M03710_2.00 NN 70-40% CisBP CTCACGCCCCCC 55.1% identity Open · Scan
M04475_2.00 NN 70-40% CisBP GATGCACGTACCGTGCCTCA 55.1% identity Open · Scan
M04505_2.00 NN 70-40% CisBP AGCTTTTCCCACAC 55.1% identity Open · Scan
M07579_2.00 NN 70-40% CisBP CATCTCCAGGA 55.1% identity Open · Scan
M08375_2.00 NN 70-40% CisBP TTCCCCATTGGCTACTGCACCGGTCCT 55.1% identity Open · Scan
M00143_2.00 NN 70-40% CisBP CCCCCCCACG 54.9% identity Open · Scan
MA0753.1 NN 70-40% JASPAR CCCCCCCCAC 54.9% identity Open · Scan
M07598_2.00 NN 70-40% CisBP CTGACAATACCAAGTGTTGAC 54.7% identity Open · Scan
M08275_2.00 NN 70-40% CisBP CGCTCCCGGGCCCCC 54.7% identity Open · Scan
M05844_2.00 NN 70-40% CisBP TCACCTGT 54.3% identity Open · Scan
M07842_2.00 NN 70-40% CisBP CTCACCTG 54.3% identity Open · Scan
MA0103.1 NN 70-40% JASPAR CACCTG 54.3% identity Open · Scan
MA0103.2 NN 70-40% JASPAR CCTCACCTG 54.3% identity Open · Scan
M01468_2.00 NN 70-40% CisBP TTACCCCTGA 53.3% identity Open · Scan
M00613_2.00 NN 70-40% CisBP TTTTTTTC 53.1% identity Open · Scan
M00641_2.00 NN 70-40% CisBP ATTGACCACT 53.0% identity Open · Scan
M00943_2.00 NN 70-40% CisBP CCCGCTGC 53.0% identity Open · Scan
M00950_2.00 NN 70-40% CisBP GCAGCCCA 53.0% identity Open · Scan
M00952_2.00 NN 70-40% CisBP GGATGCTC 53.0% identity Open · Scan
M07683_2.00 NN 70-40% CisBP GTGGGAAAGCCT 53.0% identity Open · Scan
M07703_2.00 NN 70-40% CisBP CCGACGG 53.0% identity Open · Scan
MA1601.1 NN 70-40% JASPAR ATGTGGGAAA 53.0% identity Open · Scan
M06112_2.00 NN 70-40% CisBP CTACTTTCACCGGGG 52.9% identity Open · Scan
M07635_2.00 NN 70-40% CisBP AAGTTTTCTTGTATTATATCT 52.0% identity Open · Scan
MA0146.1 NN 70-40% JASPAR GGGGCCGAGGCCTG 52.0% identity Open · Scan
M07727_2.00 NN 70-40% CisBP CGCCGCCTCCCC 51.9% identity Open · Scan
MA1596.1 NN 70-40% JASPAR GCCTCAGCCTCCCGAG 51.9% identity Open · Scan
M08239_2.00 NN 70-40% CisBP GGGCCGCTCTAGGCTGCCGG 51.8% identity Open · Scan
M06084_2.00 NN 70-40% CisBP AGACCACCCAC 51.6% identity Open · Scan
M08194_2.00 NN 70-40% CisBP GATGGCGCCAC 51.5% identity Open · Scan
M00944_2.00 NN 70-40% CisBP TCGCTATAA 51.0% identity Open · Scan
M00955_2.00 NN 70-40% CisBP ACGTCCTCT 51.0% identity Open · Scan
M07761_2.00 NN 70-40% CisBP CTGATTATTCACCCA 51.0% identity Open · Scan
M02924_2.00 NN 70-40% CisBP AGTGTTAACAGAACACCT 50.9% identity Open · Scan
M04463_2.00 NN 70-40% CisBP CACCACGCCCA 50.9% identity Open · Scan
M07667_2.00 NN 70-40% CisBP CCGCACAGGCCCCCGGGCCCC 50.9% identity Open · Scan
MA0039.1 NN 70-40% JASPAR TAAAGGAAGG 50.9% identity Open · Scan
MA0039.3 NN 70-40% JASPAR CCACACCCTGC 50.9% identity Open · Scan
MA0056.1 NN 70-40% JASPAR TGGGGA 50.9% identity Open · Scan
MA0528.1 NN 70-40% JASPAR GGAGGAGGAGGGGGAGGAGGA 50.9% identity Open · Scan
M01457_2.00 NN 70-40% CisBP GCGCACGGAC 50.0% identity Open · Scan
M07686_2.00 NN 70-40% CisBP TAGCTTGTTTCCAGCCAC 50.0% identity Open · Scan
M08283_2.00 NN 70-40% CisBP GACTTTTATTTT 50.0% identity Open · Scan
M08395_2.00 NN 70-40% CisBP GCTGCCTACTCTTCC 50.0% identity Open · Scan
M09008_2.00 NN 70-40% CisBP CCCGGCCCCACCCT 50.0% identity Open · Scan
MA0088.1 NN 70-40% JASPAR GATTTCCCATAATGCCTTGC 50.0% identity Open · Scan
MA0493.1 NN 70-40% JASPAR GGCCACACCCA 50.0% identity Open · Scan
MA0599.1 NN 70-40% JASPAR GCCCCGCCCC 50.0% identity Open · Scan
MA1655.1 NN 70-40% JASPAR GGGAACAGCCAC 50.0% identity Open · Scan
ModCRE12
MotifPredictionSourceDNA bindingSupportLogoActions
DIMER_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:4:53_1llm_D_1 ModCRE Homology model GTTCCCGCGGTA Region 4-53 · 1 3D model Open · Scan
TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:53_3uk3_C_1 ModCRE Homology model GATGACATCAC Region 2-53 · 1 3D model Open · Scan
TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:53_4is1_C_1 ModCRE Homology model GATGACATCAG Region 2-53 · 1 3D model Open · Scan
TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:54_3uk3_D_1 ModCRE Homology model CGGGGCCATC Region 2-54 · 1 3D model Open · Scan
TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:54_4is1_D_1 ModCRE Homology model CAGGTGCATC Region 2-54 · 1 3D model Open · Scan
TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:4:52_6u9q_A_1 ModCRE Homology model ATTTAAAAAGGG Region 4-52 · 1 3D model Open · Scan
a0a994j5q4.af3.0 ModCRE AlphaFold3 model AAAAAAGGGGGAAGAGGGGGT AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5q4.af3.1 ModCRE AlphaFold3 model AAAAAAGGGGGAAGAGGGCGT AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5q4.af3.2 ModCRE AlphaFold3 model CCGCGATGACTCCGAAATCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5q4.af3.3 ModCRE AlphaFold3 model AAAGTCCTCCGATGAAGGGG AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5q4.af3.4 ModCRE AlphaFold3 model AGCCGGATGATCGACTCCGAAGAA AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j5q4.af3.5 ModCRE AlphaFold3 model AACCGGGCGGAATCGATCGTCGCAGAGC AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 630 aa
2-54

Region 2-54 6 PWM

Residues
53 aa
Domains
PF00096 · Zinc finger, C2H2 type
3D models
6 active PDBs · 6 summary rows
Templates
1LLM, 3UK3, 4IS1, 6U9Q
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
12 active PDB models 6 summary rows
Region 2-546 models · 6 summary rows
Actions
Predicted = Low DIMER_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:4:53_1llm_D_1 1llm 4-53 View model · PDB
Predicted = Low TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:53_3uk3_C_1 3uk3 2-53 View model · PDB
Predicted = Low TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:53_4is1_C_1 4is1 2-53 View model · PDB
Predicted = Low TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:54_3uk3_D_1 3uk3 2-54 View model · PDB
Predicted = Low TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:54_4is1_D_1 4is1 2-54 View model · PDB
Predicted = Low TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:4:52_6u9q_A_1 6u9q 4-52 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 4is1 1:63 2 53 P:C · DNA:A,B 63.5% / 80.8% 100 View · PDB TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:53_4is1_C_1
2 3uk3 1:63 2 53 P:C · DNA:A,B 63.5% / 80.8% 100 View · PDB TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:53_3uk3_C_1
3 4is1 1:63 2 54 P:D · DNA:A,B 62.3% / 81.1% 98 View · PDB TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:54_4is1_D_1
4 3uk3 1:63 2 54 P:D · DNA:A,B 62.3% / 81.1% 98 View · PDB TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:2:54_3uk3_D_1
5 6u9q 1:63 4 52 P:A · DNA:B,C 53.1% / 67.3% 55 View · PDB TFS_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:4:52_6u9q_A_1
1 1llm 1:63 4,4 53,53 P:C,D · DNA:A,B 40.0% / 50.0% 57,58 View · PDB DIMER_tr_A0A994J5Q4_A0A994J5Q4_HUMAN:4:53_1llm_D_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a994j5q4.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5q4.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5q4.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5q4.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5q4.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j5q4.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
4-24PF00096Zinc finger, C2H2 typeoverlaps 2-54