ModCRE DB

Transcription factor

A0A994J6Y5 - ZMYND11

Zinc finger MYND domain-containing protein 11

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 579 aa

9 Generated PWM 9 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE9
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A994J6Y5_A0A994J6Y5_HUMAN:21:77_7y43_A_1 ModCRE Homology model CCCGCGCCGCGA Region 21-77 · 1 3D model Open · Scan
TFS_tr_A0A994J6Y5_A0A994J6Y5_HUMAN:21:77_8h7a_A_1 ModCRE Homology model TTAAAAAAAAA Region 21-77 · 1 3D model Open · Scan
TFS_tr_A0A994J6Y5_A0A994J6Y5_HUMAN:21:77_8h7a_B_1 ModCRE Homology model TTGCGCGCTG Region 21-77 · 1 3D model Open · Scan
a0a994j6y5.af3.0 ModCRE AlphaFold3 model AAGGTCACACGGCGCGCCCCCCT AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j6y5.af3.1 ModCRE AlphaFold3 model TGGTTTACTGGGAT AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j6y5.af3.2 ModCRE AlphaFold3 model AAGGTCACACGGCGCGCCCCCCT AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j6y5.af3.3 ModCRE AlphaFold3 model GCTCCGTACGGGCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j6y5.af3.4 ModCRE AlphaFold3 model CCCTGTGACCACCCC AlphaFold3 model · ModCRE PWM Open · Scan
a0a994j6y5.af3.5 ModCRE AlphaFold3 model ATTTTATCGTGATAGGTAA AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 579 aa
21-77

Region 21-77 3 PWM

Residues
57 aa
Domains
PF21524 · SAM domain-containing protein 1, WH domain
3D models
3 active PDBs · 3 summary rows
Templates
7Y43, 8H7A
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
9 active PDB models 3 summary rows
Region 21-773 models · 3 summary rows
Actions
Predicted = Low TFS_tr_A0A994J6Y5_A0A994J6Y5_HUMAN:21:77_7y43_A_1 7y43 21-77 View model · PDB
Predicted = Low TFS_tr_A0A994J6Y5_A0A994J6Y5_HUMAN:21:77_8h7a_A_1 8h7a 21-77 View model · PDB
Predicted = Low TFS_tr_A0A994J6Y5_A0A994J6Y5_HUMAN:21:77_8h7a_B_1 8h7a 21-77 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 7y43 21:77 21 77 P:A · DNA:B,C 36.8% / 54.4% 72 View · PDB TFS_tr_A0A994J6Y5_A0A994J6Y5_HUMAN:21:77_7y43_A_1
2 8h7a 21:77 21 77 P:B · DNA:C,D 36.8% / 54.4% 74 View · PDB TFS_tr_A0A994J6Y5_A0A994J6Y5_HUMAN:21:77_8h7a_B_1
3 8h7a 21:77 21 77 P:A · DNA:C,D 36.8% / 54.4% 74 View · PDB TFS_tr_A0A994J6Y5_A0A994J6Y5_HUMAN:21:77_8h7a_A_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a994j6y5.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j6y5.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j6y5.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j6y5.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j6y5.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a994j6y5.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
19-67PF21524SAM domain-containing protein 1, WH domainoverlaps 21-77
182-241PF00439BromodomainNo overlap with loaded model regions
282-350PF00855PWWP domainNo overlap with loaded model regions
443-495PF23461ZMYND11 protein coiled-coilNo overlap with loaded model regions
540-575PF24324ZMYND11/ZMYD8, MYND zinc fingerNo overlap with loaded model regions