ModCRE DB

Transcription factor

A0A9L9PXL4 - PBRM1

Protein polybromo-1 (BRG1-associated factor 180)

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 1704 aa

10 Generated PWM 10 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)0

No generated PWM in this category.

Nearest Neighbor (70% - 40%)0

No generated PWM in this category.

ModCRE10
MotifPredictionSourceDNA bindingSupportLogoActions
TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_7w9v_K_1 ModCRE Homology model GAGGGCCCT Region 212-280 · 1 3D model Open · Scan
TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_8hag_K_1 ModCRE Homology model AGAATTTAG Region 212-280 · 1 3D model Open · Scan
TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_8hai_K_1 ModCRE Homology model AGGGCTTTT Region 212-280 · 1 3D model Open · Scan
TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_8hak_N_1 ModCRE Homology model TTAAAAA Region 212-280 · 1 3D model Open · Scan
a0a9l9pxl4.af3.0 ModCRE AlphaFold3 model GCCAAGATCCGGCCACGAGGGCGAAGGCCG AlphaFold3 model · ModCRE PWM Open · Scan
a0a9l9pxl4.af3.1 ModCRE AlphaFold3 model GCCAAGATCGGGCCACGAGGGCGAAGGCCG AlphaFold3 model · ModCRE PWM Open · Scan
a0a9l9pxl4.af3.2 ModCRE AlphaFold3 model GTTTTAAAAACGTTGGCTGGCGAATGCGC AlphaFold3 model · ModCRE PWM Open · Scan
a0a9l9pxl4.af3.3 ModCRE AlphaFold3 model CGGAATTTCCCCATCTGTC AlphaFold3 model · ModCRE PWM Open · Scan
a0a9l9pxl4.af3.4 ModCRE AlphaFold3 model CGCCCAATAGAGGGCGGGAACCAAAAAGTT AlphaFold3 model · ModCRE PWM Open · Scan
a0a9l9pxl4.af3.5 ModCRE AlphaFold3 model CATAAATATTCATCGCCGTGGAGGCTGCAA AlphaFold3 model · ModCRE PWM Open · Scan

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 1704 aa
212-280

Region 212-280 4 PWM

Residues
69 aa
Domains
PF00439 · Bromodomain
3D models
4 active PDBs · 4 summary rows
Templates
7W9V, 8HAG, 8HAI, 8HAK
Sources
Predicted = Low
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
10 active PDB models 4 summary rows
Region 212-2804 models · 4 summary rows
Actions
Predicted = Low TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_7w9v_K_1 7w9v 212-280 View model · PDB
Predicted = Low TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_8hag_K_1 8hag 212-280 View model · PDB
Predicted = Low TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_8hai_K_1 8hai 212-280 View model · PDB
Predicted = Low TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_8hak_N_1 8hak 212-280 View model · PDB

Model-summary evidence imported for this region.

RankTemplateDomainN-tailsC-tailsChainsIdentity / similarityCoverageModel file
1 8hak 212:280 212 280 P:N · DNA:J,K 34.8% / 56.5% 13 View · PDB TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_8hak_N_1
2 8hag 212:280 212 280 P:K · DNA:I,J 34.8% / 56.5% 13 View · PDB TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_8hag_K_1
3 8hai 212:280 212 280 P:K · DNA:I,J 34.8% / 56.5% 12 View · PDB TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_8hai_K_1
4 7w9v 212:280 212 280 P:K · DNA:I,J 34.8% / 56.5% 12 View · PDB TFS_tr_A0A9L9PXL4_A0A9L9PXL4_HUMAN:212:280_7w9v_K_1
Full sequence / unlocalized models6 models
SourceModelTemplateResidues modeledActions
Predicted = Lowa0a9l9pxl4.af3.0-Full sequence / not localizedView model · PDB
Predicted = Lowa0a9l9pxl4.af3.1-Full sequence / not localizedView model · PDB
Predicted = Lowa0a9l9pxl4.af3.2-Full sequence / not localizedView model · PDB
Predicted = Lowa0a9l9pxl4.af3.3-Full sequence / not localizedView model · PDB
Predicted = Lowa0a9l9pxl4.af3.4-Full sequence / not localizedView model · PDB
Predicted = Lowa0a9l9pxl4.af3.5-Full sequence / not localizedView model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
64-138PF00439BromodomainNo overlap with loaded model regions
198-274PF00439Bromodomainoverlaps 212-280
400-472PF00439BromodomainNo overlap with loaded model regions
556-627PF00439BromodomainNo overlap with loaded model regions
693-764PF00439BromodomainNo overlap with loaded model regions
804-881PF00439BromodomainNo overlap with loaded model regions
972-1089PF01426BAH domainNo overlap with loaded model regions
1172-1287PF01426BAH domainNo overlap with loaded model regions
1397-1458PF00505HMG (high mobility group) boxNo overlap with loaded model regions