ModCRE DB

Transcription factor

A0AAA9YHN4 - SOX8

SRY-box transcription factor 8

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 267 aa

40 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)5
MotifPredictionSourceDNA bindingSupportLogoActions
MA0868.1 NN 70+% JASPAR AACAATGTGCAGTGTT 93.5% identity Open · Scan
M00197_2.00 NN 70+% CisBP AAAACAAT 88.9% identity Open · Scan
M03537_2.00 NN 70+% CisBP ATGAATTGCAGTCAT 76.2% identity Open · Scan
MA0442.1 NN 70+% JASPAR CTTTGT 76.2% identity Open · Scan
MA0077.1 NN 70+% JASPAR CCATTGTTC 74.2% identity Open · Scan
Nearest Neighbor (70% - 40%)35
MotifPredictionSourceDNA bindingSupportLogoActions
MA1561.1 NN 70-40% JASPAR ACCGAACAATG 67.5% identity Open · Scan
M09410_2.00 NN 70-40% CisBP TCCTTTGTTCTC 65.8% identity Open · Scan
MA0867.1 NN 70-40% JASPAR GAACAATTGCAGTGTT 65.8% identity Open · Scan
MA0866.1 NN 70-40% JASPAR AACAATGGTAGTGTT 63.4% identity Open · Scan
M03516_2.00 NN 70-40% CisBP AACAATGTTCATTGTT 61.3% identity Open · Scan
MA0869.1 NN 70-40% JASPAR AACAATTTCAGTGTT 61.3% identity Open · Scan
M09408_2.00 NN 70-40% CisBP TTTTGTTTT 60.9% identity Open · Scan
M00201_2.00 NN 70-40% CisBP ATTGTTCTGC 60.0% identity Open · Scan
M02488_2.00 NN 70-40% CisBP CATTGTTTTC 60.0% identity Open · Scan
M05754_2.00 NN 70-40% CisBP CATTGTTC 60.0% identity Open · Scan
M03979_2.00 NN 70-40% CisBP AAACAATAACATTGTTT 58.5% identity Open · Scan
MA0870.1 NN 70-40% JASPAR AACAATAACATTGTT 58.4% identity Open · Scan
M00212_2.00 NN 70-40% CisBP GAACAATA 56.0% identity Open · Scan
M09694_2.00 NN 70-40% CisBP AACAATGGAC 56.0% identity Open · Scan
MA0142.1 NN 70-40% JASPAR CTTTGTTATGCAAAT 56.0% identity Open · Scan
MA0143.4 NN 70-40% JASPAR AAACAATGGAA 56.0% identity Open · Scan
MA1120.1 NN 70-40% JASPAR AAACAATGGCA 56.0% identity Open · Scan
M09404_2.00 NN 70-40% CisBP TAACAATA 55.8% identity Open · Scan
M11309_2.00 NN 70-40% CisBP TTAACAATAC 55.8% identity Open · Scan
MA0087.1 NN 70-40% JASPAR ATTGTTA 55.8% identity Open · Scan
M03538_2.00 NN 70-40% CisBP AAACAATGACATTGTTT 55.7% identity Open · Scan
M05769_2.00 NN 70-40% CisBP CCATTGTGAG 55.7% identity Open · Scan
MA0514.1 NN 70-40% JASPAR CCTTTGTTTT 55.7% identity Open · Scan
MA1562.1 NN 70-40% JASPAR CCGAACAATG 55.5% identity Open · Scan
M03983_2.00 NN 70-40% CisBP AAACAATTTCAGTGTTT 55.1% identity Open · Scan
MA0084.1 NN 70-40% JASPAR GTAAACAAT 55.0% identity Open · Scan
M00204_2.00 NN 70-40% CisBP AAAACAAT 54.7% identity Open · Scan
MA1563.1 NN 70-40% JASPAR CACAATGC 54.7% identity Open · Scan
M03981_2.00 NN 70-40% CisBP ATTGTTCGGTGGT 53.8% identity Open · Scan
MA0078.1 NN 70-40% JASPAR CTCATTGTC 53.1% identity Open · Scan
M03508_2.00 NN 70-40% CisBP AACAATAACATTGTT 52.8% identity Open · Scan
MA1152.1 NN 70-40% JASPAR CTATTGTTTT 52.8% identity Open · Scan
M03974_2.00 NN 70-40% CisBP AACAATAACATTGTT 52.0% identity Open · Scan
M05892_2.00 NN 70-40% CisBP AAACAATAGA 52.0% identity Open · Scan
MA0515.1 NN 70-40% JASPAR CCATTGTTTT 52.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 267 aa
100-141

Region 100-141 0 PWM

Residues
42 aa
Domains
PF00505 · HMG (high mobility group) box
3D models
1 active PDB
Templates
4EUW
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 100-1411 model
Actions
Predicted = Low TFS_A0AAA9YHN4:100:141_4euw_A_1 4euw 100-141 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
18-89PF12444Sox developmental protein N terminalNo overlap with loaded model regions
102-142PF00505HMG (high mobility group) boxoverlaps 100-141