ModCRE DB

Transcription factor

A0AAQ5BGK0 - PAX7

Paired box 7

Homo sapiens (Human) · Unreviewed (UniProtKB/TrEMBL) · 537 aa

115 Generated PWM 1 3D models

Motif Prediction

Only entries with a generated matrix are shown here.

Known0

No generated PWM in this category.

Nearest Neighbor (>70%)28
MotifPredictionSourceDNA bindingSupportLogoActions
MA0680.1 NN 70+% JASPAR TAATCGATTA 94.0% identity Open · Scan
M05419_2.00 NN 70+% CisBP CGATTAGTCACGGTT 93.4% identity Open · Scan
M00354_2.00 NN 70+% CisBP CCGATTA 78.1% identity Open · Scan
M03278_2.00 NN 70+% CisBP TTAATTTAATTAT 75.0% identity Open · Scan
M04917_2.00 NN 70+% CisBP GTAATTAG 75.0% identity Open · Scan
M10741_2.00 NN 70+% CisBP AACTAATTACCATTATCG 75.0% identity Open · Scan
MA0853.1 NN 70+% JASPAR CGCATTAATTAATTACC 75.0% identity Open · Scan
MA0854.1 NN 70+% JASPAR CGAATTAATTAATCACC 75.0% identity Open · Scan
M06322_2.00 NN 70+% CisBP TTAATTA 74.6% identity Open · Scan
M06370_2.00 NN 70+% CisBP TTAATTA 74.1% identity Open · Scan
MA0713.1 NN 70+% JASPAR TAATTTAATTA 73.8% identity Open · Scan
MA0779.1 NN 70+% JASPAR CGTCACGCATGACTGCA 73.8% identity Open · Scan
MA0781.1 NN 70+% JASPAR CGTCACGCATGACTGCA 73.8% identity Open · Scan
MA0067.1 NN 70+% JASPAR AGTCACGC 72.6% identity Open · Scan
M00402_2.00 NN 70+% CisBP TAATTAG 72.5% identity Open · Scan
MA0634.1 NN 70+% JASPAR TCTAATTAAA 72.5% identity Open · Scan
MA1481.1 NN 70+% JASPAR CTAATTAC 72.5% identity Open · Scan
MA0780.1 NN 70+% JASPAR TAATCGATTA 72.4% identity Open · Scan
M03294_2.00 NN 70+% CisBP CGTCACGCTTGACTGCTC 72.3% identity Open · Scan
M06326_2.00 NN 70+% CisBP TTAATT 72.3% identity Open · Scan
M02425_2.00 NN 70+% CisBP CAGTCAAGCG 71.8% identity Open · Scan
M03945_2.00 NN 70+% CisBP GTCATGCGTGACG 71.5% identity Open · Scan
M03076_2.00 NN 70+% CisBP TTAATTAAATTAA 71.2% identity Open · Scan
MA0874.1 NN 70+% JASPAR GTCCATTAATTAATGGA 71.2% identity Open · Scan
M03876_2.00 NN 70+% CisBP TAATTAAATTA 71.1% identity Open · Scan
M03236_2.00 NN 70+% CisBP GTTAATCCGC 70.4% identity Open · Scan
MA0883.1 NN 70+% JASPAR TGAACCGGATTAATGAA 70.4% identity Open · Scan
M05685_2.00 NN 70+% CisBP GGCGCAGTCATGCGTGACGG 70.0% identity Open · Scan
Nearest Neighbor (70% - 40%)87
MotifPredictionSourceDNA bindingSupportLogoActions
MA0681.1 NN 70-40% JASPAR TAATTTAATTA 69.8% identity Open · Scan
M03204_2.00 NN 70-40% CisBP TTAATTGG 69.6% identity Open · Scan
MA0720.1 NN 70-40% JASPAR CTAATTAA 69.6% identity Open · Scan
M03121_2.00 NN 70-40% CisBP TTAATTGG 68.8% identity Open · Scan
MA0716.1 NN 70-40% JASPAR CTAATTAA 68.8% identity Open · Scan
M03855_2.00 NN 70-40% CisBP TAATTAGATTA 68.2% identity Open · Scan
M06555_2.00 NN 70-40% CisBP AGTAACAGT 68.1% identity Open · Scan
M02079_2.00 NN 70-40% CisBP AATTAATTAGT 67.7% identity Open · Scan
MA0726.1 NN 70-40% JASPAR CTAATTAG 67.7% identity Open · Scan
M09210_2.00 NN 70-40% CisBP TAATTGAATTA 67.2% identity Open · Scan
MA0075.1 NN 70-40% JASPAR AATTA 67.2% identity Open · Scan
MA0075.3 NN 70-40% JASPAR CTAATTAA 67.2% identity Open · Scan
M00426_2.00 NN 70-40% CisBP GCTAATTGG 67.1% identity Open · Scan
M05367_2.00 NN 70-40% CisBP TTAATTAG 67.1% identity Open · Scan
MA0630.1 NN 70-40% JASPAR TTAATTGG 67.1% identity Open · Scan
M02111_2.00 NN 70-40% CisBP GTTAATTAG 66.6% identity Open · Scan
MA0721.1 NN 70-40% JASPAR CTAATTAA 66.6% identity Open · Scan
M03947_2.00 NN 70-40% CisBP AGCGTGACGGTTCCGCT 66.4% identity Open · Scan
MA0717.1 NN 70-40% JASPAR CCAATTAA 66.1% identity Open · Scan
M03888_2.00 NN 70-40% CisBP GCGTGACGAATC 65.7% identity Open · Scan
M05245_2.00 NN 70-40% CisBP GTAATTAG 65.6% identity Open · Scan
M09208_2.00 NN 70-40% CisBP CCTAATCCTCTTA 65.5% identity Open · Scan
MA0467.1 NN 70-40% JASPAR AAGAGGATTAG 65.5% identity Open · Scan
MA0718.1 NN 70-40% JASPAR GCCAATTAAC 65.2% identity Open · Scan
M02426_2.00 NN 70-40% CisBP ACCGTGACCAC 65.0% identity Open · Scan
M03776_2.00 NN 70-40% CisBP TAATTGAATTA 64.5% identity Open · Scan
M02123_2.00 NN 70-40% CisBP TTAATCCCT 63.9% identity Open · Scan
MA0725.1 NN 70-40% JASPAR CTAATTAT 63.8% identity Open · Scan
M09569_2.00 NN 70-40% CisBP GTTAATCCCT 63.6% identity Open · Scan
M03896_2.00 NN 70-40% CisBP CTAATTAG 63.0% identity Open · Scan
M06523_2.00 NN 70-40% CisBP TTAATTG 63.0% identity Open · Scan
M02097_2.00 NN 70-40% CisBP AATTAATTAG 62.9% identity Open · Scan
M03892_2.00 NN 70-40% CisBP GATAATTGATTATC 62.5% identity Open · Scan
M03250_2.00 NN 70-40% CisBP TTAATCCG 62.2% identity Open · Scan
M09681_2.00 NN 70-40% CisBP CTAATCCG 62.2% identity Open · Scan
MA0662.1 NN 70-40% JASPAR TCTAATTAAC 62.2% identity Open · Scan
MA0711.1 NN 70-40% JASPAR TTAATCCG 62.2% identity Open · Scan
M02082_2.00 NN 70-40% CisBP ATTGTACAAT 62.1% identity Open · Scan
M04941_2.00 NN 70-40% CisBP CTAATTAC 61.0% identity Open · Scan
M06552_2.00 NN 70-40% CisBP TTAATTA 60.6% identity Open · Scan
M01241_2.00 NN 70-40% CisBP TTAATCCC 60.0% identity Open · Scan
M03819_2.00 NN 70-40% CisBP TAATCCGTTAATCCG 59.3% identity Open · Scan
MA0648.1 NN 70-40% JASPAR GCTAATCCCC 59.0% identity Open · Scan
M02143_2.00 NN 70-40% CisBP TTAATTGG 58.9% identity Open · Scan
MA0644.1 NN 70-40% JASPAR ACCAATTAAC 58.7% identity Open · Scan
M02231_2.00 NN 70-40% CisBP TTAATTGG 58.0% identity Open · Scan
M00452_2.00 NN 70-40% CisBP GCTAATTG 57.6% identity Open · Scan
M06539_2.00 NN 70-40% CisBP CTAATTA 57.6% identity Open · Scan
M02209_2.00 NN 70-40% CisBP AGCGGATATA 57.4% identity Open · Scan
MA0715.1 NN 70-40% JASPAR TAATTTAATTA 57.3% identity Open · Scan
M06318_2.00 NN 70-40% CisBP TTAATTA 56.9% identity Open · Scan
M06310_2.00 NN 70-40% CisBP TTAATTA 56.4% identity Open · Scan
MA0621.1 NN 70-40% JASPAR AATTAATTAGT 55.9% identity Open · Scan
M00679_2.00 NN 70-40% CisBP TTAATCCC 55.7% identity Open · Scan
M02078_2.00 NN 70-40% CisBP AATTAATTAGT 55.7% identity Open · Scan
M04929_2.00 NN 70-40% CisBP CTAATCCG 55.5% identity Open · Scan
MA0654.1 NN 70-40% JASPAR CTAATTAA 55.2% identity Open · Scan
M09153_2.00 NN 70-40% CisBP GTTAATCCCCT 54.6% identity Open · Scan
MA0712.1 NN 70-40% JASPAR TTAATCCT 54.6% identity Open · Scan
MA0719.1 NN 70-40% JASPAR ATAATCCC 54.3% identity Open · Scan
MA0884.1 NN 70-40% JASPAR CTAATTTAATCAA 54.3% identity Open · Scan
M00417_2.00 NN 70-40% CisBP GCTAATTA 54.0% identity Open · Scan
M00674_2.00 NN 70-40% CisBP TTAATCCC 54.0% identity Open · Scan
M06291_2.00 NN 70-40% CisBP TTAATTA 54.0% identity Open · Scan
MA0710.1 NN 70-40% JASPAR GCTAATTAGC 54.0% identity Open · Scan
MA0891.1 NN 70-40% JASPAR CCTAATCCGC 53.9% identity Open · Scan
M02162_2.00 NN 70-40% CisBP TTAATTAG 53.7% identity Open · Scan
M02103_2.00 NN 70-40% CisBP AGGTGTAAA 53.5% identity Open · Scan
M02195_2.00 NN 70-40% CisBP CCTAATCCGC 53.5% identity Open · Scan
M00428_2.00 NN 70-40% CisBP TTAATCCC 53.0% identity Open · Scan
MA0069.1 NN 70-40% JASPAR TTCACGCATGAGTT 52.2% identity Open · Scan
M02690_2.00 NN 70-40% CisBP AGTCACGC 52.1% identity Open · Scan
M03851_2.00 NN 70-40% CisBP CTAATTGA 51.9% identity Open · Scan
M00440_2.00 NN 70-40% CisBP TTAATCCC 51.8% identity Open · Scan
MA1547.1 NN 70-40% JASPAR ATAATCCC 51.8% identity Open · Scan
M08135_2.00 NN 70-40% CisBP TAATTTAATCA 51.6% identity Open · Scan
MA0468.1 NN 70-40% JASPAR TAATTTAATCA 51.6% identity Open · Scan
MA0611.1 NN 70-40% JASPAR CCAATCAA 51.6% identity Open · Scan
MA0682.1 NN 70-40% JASPAR TTAATCCC 51.6% identity Open · Scan
MA0682.2 NN 70-40% JASPAR CTAATCCC 51.6% identity Open · Scan
M00424_2.00 NN 70-40% CisBP ACTAATTA 51.2% identity Open · Scan
M09622_2.00 NN 70-40% CisBP GCAGCCAAGCGTGACC 51.2% identity Open · Scan
MA0014.1 NN 70-40% JASPAR AGAGCACTGAAGCGTAACCG 51.2% identity Open · Scan
MA0014.2 NN 70-40% JASPAR GAGGGCAGCCAAGCGTGAC 51.2% identity Open · Scan
M03814_2.00 NN 70-40% CisBP GTAATGGC 50.8% identity Open · Scan
MA0894.1 NN 70-40% JASPAR GCTAATTGGC 50.8% identity Open · Scan
M03798_2.00 NN 70-40% CisBP GGTAATTAGC 50.0% identity Open · Scan
ModCRE0

No generated PWM in this category.

Model-supported DNA-binding regions

Protein residue intervals where structure models support predicted PWMs. Domain annotations and modeled regions are shown together when available.

1 537 aa
216-275

Region 216-275 0 PWM

Residues
60 aa
Domains
PF00046 · Homeodomain
3D models
1 active PDB
Templates
1FJL
Sources
Structure model
Scan this region Show models
3D Models
Collapsible technical table. Rows are grouped by protein region and retain model, template, residue coverage, and available summary evidence.
1 active PDB model
Region 216-2751 model
Actions
Predicted = Low DIMER_A0AAQ5BGK0:216:275_1fjl_A_1 1fjl 216-275 View model · PDB

View full model evidence table for rank, chains, N/C tails, coverage, RMSD-template information, identity/similarity, and linked model files.

Domains

Annotated protein domains. Overlaps with model-supported DNA-binding regions are shown when available.

ResiduesPFAMDomainUsed by prediction region?
34-161PF00292'Paired box' domainNo overlap with loaded model regions
218-274PF00046Homeodomainoverlaps 216-275
346-385PF12360Paired box protein 7No overlap with loaded model regions